Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579225 in the current build, Tomato 200607 #2

Unigene SGN-U314733

Unigene Basic Information

Unigene ID:	SGN-U314733
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314733
mRNA sequence:	Length: 3066 bp

>SGN-U314733 Tomato 200607 #1 (37 members)
GAATGACCACCACTCTTCCTCGCCTACGAACTTCCTCATCCCCATTCTCCTCCTCCTTCCGATCTCTTTCTCCGGCCAAATTCATCTCCA
TAAAGGAGAACATTATATGACAGTATAGCATAGAGAAAGATCATGGCTGTAGAGGCTTTTGCCAAAACAAATTTGATGGAAGATATGGAT
GATGACGATGACATGCCTTTAGTTTTCAAACGAAGTAGTACCACATCAAAGCAAAATCAGTCCAATTCATCATCTCAGAAGCAGGATGGA
AGATCGGGGCGGCAAGTTCCTGATATACGTTCACCTAATGGCCAGAGCTCTAGTACTCATAAAGTTAAGACAGTCACCTCTTCTAAGGCA
TCTCCAGCAGTTTCACCTTTAACTAGTCCAAAAGCGTCGCCTCTGTCAAGCAGGACATCTCCTGCACCAAACTCAAGGCCGTCATCTTCT
GCAGGTAATCAGGCAAAAAATGTTAATCAACAATCCAATGTTACTCCTAAGGAGTCGAAACAAGCTGTTGAACCAAAATCTGAACCTAAT
GATGAAGCTGAGGATTCTGATGATGATAAACTATTGAGTTCTAGGGTCCCTTCTGGGTTATCTAAGAGCACTTCTGTTCATGCCAAGAAA
GTGCTTTGTACTTCAACATCAGTTCAGAAGTCTAGACCTCCCAAAAAAGAGGATTCAGATGATGAAACTCCCTTAGCATCAAGGTTTCCA
ATGAAATCCAATGCAGGGGCTTCCACTAGCAAGTTTTCTAGTTCTGAAGAAGTTAAGCCTAAGATTCGTCAGAATGGTTTGCCATCTGCG
ACAGTTTTAAGTAAGAGACCCCCTGGTGAGGTCAAGTCTGCTGCTCAGGCTTCAGTTAAAAAGCCTAGACTTTCTGATGCGTCCACACCT
GTTTCTAGTAAGCAACCGCCTTTCAAAACTGAAAAGAAGACAGAGGACGATGACGACGATGTTCCTATATCTCAGAGGATAAAAAAGGCA
GTAGATTCAGCTTCAGCTTCAGCTAGTAAAGTGTCATATGTGAAGAAAGCAACTAAAGTTGTTTCGTCATCGATGAAGAAAACAAAGAAG
AAGTTGAAAAAACCCAAGTACTCTAAGTCGTCAAAACTGCAGCCAAGCTCTGGTGATGGGCAAAAATGGACTACACTGGAACACAATGGT
GTGATTTTTCCACCTCCATACAAACCTCATGGGGTTAAGATGCTCTACAAGGGAAAGCCCGTGGATCTTACTCCAGAGCAGGAAGAGGTC
GCAACAATGTATGCCGTGATGTTAGACACTGAATACATGACTAAAGAGCAGTTCAAAGAGAATTTCATGAATGACTGGAGAAAAATACTT
GGAAAAAACCATGTCATTCAAAAGTTAGAAGAGTGTGATTTTACCCCAATATATGAGTGGCATCAGAGTGAGAAGGAGAAGAAGAAGCAA
ATGAGTTCAGAAGAGAAGAAGGCATTGAGAGAAGAGAAACTTAAGCAAGAAGAGAAATACATGTGGGCTATTGTGGATGGTGTTAAAGAG
AAGGTTGGGAACTTTCGGGTTGAACCACCTGGATTGTTCCGAGGCCGTGGGGAACATCCAAAGATGGGAAAGCTAAAGAGACGGATCCGG
CCAAATGATATCACAATAAATATTGGAAAGGGTGTTCCAGTACCGGAGTGCCCCATCCCTGGCCAAAGGTGGAAGGAAGTAAGGCATGAC
AACACAGTAACATGGTTAGCTTTCTGGAACGACCCTATTAATCCAAGAGAATTCAAATACGTTTTCCTAGCAGCCAGTAGTTCCTTGAAA
GGGCAAAGTGATAAGGAGAAGTATGAGAAAGCTAGGCGTTTGAAGGATTACATAGAAGGCATTAGATCTGCATATACAAAAGATTTTGCA
AGTAAAGATCCTGTGAAGCGTCAGATTGCAGTTGCAACTTATCTTATCGATAAATTAGCTCTGAGGGCAGGGAATGAGAAGGATGATGAC
GAAGCTGATACAGTTGGTTGCTGTACTTTGAAAGTAGAGAATGTAGAGCCAGTACCTCCAAATATTTTGAAGTTCGATTTTCTTGGTAAA
GATTCTATCAGGTACCAAAATGAGGTGGCTGTGTATGAGCCTGTTTTTAAAGCTATTCAACAGTTCCGAAGTGGAAAAAAGGGCAGTGAC
GATCTTTTTGACAAGCTTGATACGAGTAAGCTTAATGCCCATCTAAAGGAACTCATGCCAGGGCTCACAGCAAAAGTATTTCGTACATAT
AATGCATCTTTTACATTGGAGCAGCAATTGACTAAGCTCACACAAGGGGGGGAGCTTGCTGATAAAATTGCGGTATATAATGTGGCAAAT
AAAGAGGTTGCAATAATTTGTAATCACCAGCGTACTGTCTCGAAGTCCCATAGCGTGCAAATTTCAAGGTTGAATAACAAGATAGATGAG
TTAAAGGCTATTTTGGAAGAATTCAAAGTAGATTTGGCTCGGGCCAAAAAAGGGAAGCCTCCGGTGAAAGGCGCCGATGGCAAGGCGAAG
AGGAACTTGACCCCTCAAGCATTACAGATAAAAATAGACCAAACTAATGTGAAGATTGATAACATAGAGAGGCAAATAGATACTAAAGAA
GAGTTGAAAACTGTGGCTTTGGGCACATCAAAAATCAACTATTTGGATCCTAGGATTACTGTGGCATGGTGTAAGCGCCATGAGGTTCCC
ATTGAAAAGATGTTCAACAAGTCTCTTCTAGCAAAGTTTGCCTGGGCGATGGATGTTGAACCTTCCTTCACATTCTAAATTTTTGGTGGT
TGTTATAGTGTAGGACATCTCTTCAAAGTCAAGTCTCCCTCCTAATACCCAATTGTTCACATTTCCCCCTTCCTCCCTCCTGGAAAGAGA
ATAGGAAAAAAGTTCTATTATTTTTGCACTTAAAAAAGAAGAAAAAAAAAGAGATCTTTGATCGTTGTCTGACAATATTTAAACTTGTTT
ACCCTGACAAATTCCTGTTGTAATTTGAGCTTCTGAATTTATGGGGTAAGTTTTCCTTANAAAAAAAAAAAAAAAAAAAAAAAAATAAAA
AAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	5
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (37)

Alignment image suppressed for unigene with 37 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 4 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P117539 (881 Aa)

MAVEAFAKTNLMEDMDDDDDMPLVFKRSSTTSKQNQSNSSSQKQDGRSGRQVPDIRSPNGQSSSTHKVKTVTSSKASPAVSPLTSPKASP
LSSRTSPAPNSRPSSSAGNQAKNVNQQSNVTPKESKQAVEPKSEPNDEAEDSDDDKLLSSRVPSGLSKSTSVHAKKVLCTSTSVQKSRPP
KKEDSDDETPLASRFPMKSNAGASTSKFSSSEEVKPKIRQNGLPSATVLSKRPPGEVKSAAQASVKKPRLSDASTPVSSKQPPFKTEKKT
EDDDDDVPISQRIKKAVDSASASASKVSYVKKATKVVSSSMKKTKKKLKKPKYSKSSKLQPSSGDGQKWTTLEHNGVIFPPPYKPHGVKM
LYKGKPVDLTPEQEEVATMYAVMLDTEYMTKEQFKENFMNDWRKILGKNHVIQKLEECDFTPIYEWHQSEKEKKKQMSSEEKKALREEKL
KQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPNDITINIGKGVPVPECPIPGQRWKEVRHDNTVTWLAFWNDPIN
PREFKYVFLAASSSLKGQSDKEKYEKARRLKDYIEGIRSAYTKDFASKDPVKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVEN
VEPVPPNILKFDFLGKDSIRYQNEVAVYEPVFKAIQQFRSGKKGSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASFTLEQQLTKLT
QGGELADKIAVYNVANKEVAIICNHQRTVSKSHSVQISRLNNKIDELKAILEEFKVDLARAKKGKPPVKGADGKAKRNLTPQALQIKIDQ
TNVKIDNIERQIDTKEELKTVALGTSKINYLDPRITVAWCKRHEVPIEKMFNKSLLAKFAWAMDVEPSFTF

SignalP predicts non-secretion with a score of 0.041

IPR001631 Eukaryotic-like DNA topoisomerase I
IPR001093 IMP dehydrogenase/GMP reductase
IPR008336 Eukaryotic DNA topoisomerase I, DNA binding

Prediction based on longest six frame method

>SGN-P243929 (884 Aa)

RKIMAVEAFAKTNLMEDMDDDDDMPLVFKRSSTTSKQNQSNSSSQKQDGRSGRQVPDIRSPNGQSSSTHKVKTVTSSKASPAVSPLTSPK
ASPLSSRTSPAPNSRPSSSAGNQAKNVNQQSNVTPKESKQAVEPKSEPNDEAEDSDDDKLLSSRVPSGLSKSTSVHAKKVLCTSTSVQKS
RPPKKEDSDDETPLASRFPMKSNAGASTSKFSSSEEVKPKIRQNGLPSATVLSKRPPGEVKSAAQASVKKPRLSDASTPVSSKQPPFKTE
KKTEDDDDDVPISQRIKKAVDSASASASKVSYVKKATKVVSSSMKKTKKKLKKPKYSKSSKLQPSSGDGQKWTTLEHNGVIFPPPYKPHG
VKMLYKGKPVDLTPEQEEVATMYAVMLDTEYMTKEQFKENFMNDWRKILGKNHVIQKLEECDFTPIYEWHQSEKEKKKQMSSEEKKALRE
EKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPNDITINIGKGVPVPECPIPGQRWKEVRHDNTVTWLAFWND
PINPREFKYVFLAASSSLKGQSDKEKYEKARRLKDYIEGIRSAYTKDFASKDPVKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK
VENVEPVPPNILKFDFLGKDSIRYQNEVAVYEPVFKAIQQFRSGKKGSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASFTLEQQLT
KLTQGGELADKIAVYNVANKEVAIICNHQRTVSKSHSVQISRLNNKIDELKAILEEFKVDLARAKKGKPPVKGADGKAKRNLTPQALQIK
IDQTNVKIDNIERQIDTKEELKTVALGTSKINYLDPRITVAWCKRHEVPIEKMFNKSLLAKFAWAMDVEPSFTF

SignalP predicts non-secretion with a score of 0.071

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101515	Protein of unknown function DUF1216	92
2	120850	DNA topoisomerase I C-terminal - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA topoisomerase type I activity (GO:0003917) - Cellular Component: chromosome (GO:0005694) - Biological Process: DNA topological change (GO:0006265) - Biological Process: DNA unwinding during replication (GO:0006268) DNA topoisomerase I DNA binding eukaryotic-type - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA topoisomerase type I activity (GO:0003917) - Cellular Component: chromosome (GO:0005694) - Biological Process: DNA topological change (GO:0006265) - Biological Process: DNA unwinding during replication (GO:0006268) DNA topoisomerase I C-terminal eukaryotic-type - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA topoisomerase (ATP-hydrolyzing) activity (GO:0003918) - Cellular Component: chromosome (GO:0005694) - Biological Process: DNA topological change (GO:0006265) - Biological Process: DNA unwinding during replication (GO:0006268) DNA breaking-rejoining enzyme catalytic core - Molecular Function: DNA binding (GO:0003677) DNA topoisomerase I catalytic core eukaryotic-type - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA topoisomerase (ATP-hydrolyzing) activity (GO:0003918) - Cellular Component: chromosome (GO:0005694) - Biological Process: DNA topological change (GO:0006265) - Biological Process: DNA unwinding during replication (GO:0006268)	8
5	131096	DNA topoisomerase I C-terminal - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA topoisomerase type I activity (GO:0003917) - Cellular Component: chromosome (GO:0005694) - Biological Process: DNA topological change (GO:0006265) - Biological Process: DNA unwinding during replication (GO:0006268) DNA topoisomerase I DNA binding eukaryotic-type - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA topoisomerase type I activity (GO:0003917) - Cellular Component: chromosome (GO:0005694) - Biological Process: DNA topological change (GO:0006265) - Biological Process: DNA unwinding during replication (GO:0006268) DNA topoisomerase I C-terminal eukaryotic-type - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA topoisomerase (ATP-hydrolyzing) activity (GO:0003918) - Cellular Component: chromosome (GO:0005694) - Biological Process: DNA topological change (GO:0006265) - Biological Process: DNA unwinding during replication (GO:0006268) DNA breaking-rejoining enzyme catalytic core - Molecular Function: DNA binding (GO:0003677) DNA topoisomerase I catalytic core eukaryotic-type - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA topoisomerase (ATP-hydrolyzing) activity (GO:0003918) - Cellular Component: chromosome (GO:0005694) - Biological Process: DNA topological change (GO:0006265) - Biological Process: DNA unwinding during replication (GO:0006268)	8

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U212663	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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