Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578471, SGN-U580017, and SGN-U593346 in the current build, Tomato 200607 #2

Unigene SGN-U314473

Unigene Basic Information

Unigene ID:	SGN-U314473
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314473
mRNA sequence:	Length: 1062 bp

>SGN-U314473 Tomato 200607 #1 (13 members)
GTAAAGTAGAAGAGAAAACAACCAAAACCATATATATACATATATATAATTACATTATATTGTCTTATAACATATAGTCTTTTAAGGAAA
AACAAATTTAGAAAAAAAATAATATTATTTTACATTTTTTTTTCTTCATACAATATGGGTAGAGGGAAAGTAGAATTGAAGAGAATTGAG
AACAAAATAAATAGACAAGTTACCTTTGCAAAGAGAAGAAATGGACTCCTAAAGAAAGCTTATGAACTTTCTATACTTTGTGATGCTGAA
ATTGCTCTTATTATTTTCTCTAGTCGTGGCAAGCTTTATGAATTTTGCAGCAATTCAAGTATGTCCAAGACATTGGAGAGATACCACAGA
TACAATTATGGTACACTTGAAGGAACCCAAACTTCATCAGATTCACAGAACAACTACCAAGAGTATTTGAAGCTTAAAACAAGAGTGGAA
ATGTTACAACAGTCTCAAAGGCATTTGCTAGGTGAGGATTTGGGACAATTGGGCACAAAAGACTTGGAACAGCTTGAACGTCAATTGGAT
TCATCATTGAGGCAAATTAGGTCAACAAAGACACAACACATTCTTGATCAACTTGCTGAACTTCAACAAAAGGAACAATCTCTTACTGAA
ATGAACAAATCTTTGAGAATAAAGTTGGAAGAACTTGGTGTTACCTTTCAAACATCATGGCATTGTGGTGAGCAAAGTGTACAATATAGA
CATGAACAGCCTTCTCATCATGAGGGATTTTTTCAACATGTAAATTGCAATAATACATTGCCTATAAGCACCATCAACACATGATGCTAC
TGGAGTTGTACCTGGATGGATGCTTTGAATTTGGAGTATATGGAGAGAAAAAATCCTCTTAGTTATACAAGTTATTTATTTTTATTAAAA
AAATAAGTTAGATGGAGAATTATATATATCATACTTTAAAGAACTTATATTGTTTGAATGTTTTAGCTAGCAAACACTTTGGATTATATA
TAATATTGTGATATATTTATTGTCAAGAAGAGTATGGCAATATTGATAACAATATATTTTGAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
rin	ripening inhibitor	MADS-BOX transcription factor

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cTOS	suspension cultures	8026	1

mRNA member sequences (13)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (2)

Annotations (manual: 2 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101412	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	242
2	118437	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	170
5	128950	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	149

Preceding Unigenes (1)

Unigene	Build
SGN-U212614	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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