Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578831 in the current build, Tomato 200607 #2

Unigene SGN-U314421

Unigene Basic Information

Unigene ID:	SGN-U314421
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314421
mRNA sequence:	Length: 2015 bp

>SGN-U314421 Tomato 200607 #1 (412 members)
GGCGATTGGCGGCCAAATCGGCCGAATTGACTTGTGGTTTGTGTTGTTATTCTCTATACGCAGCCAGGGTTTTAGCAAAGCTCAGAAAAG
TTTTAAGACATCATGGGTAAAGAGAAGATTCATATCAGCATTGTTGTCATTGGACATGTCGACTCTGGAAAGTCGACCACTACTGGTCAC
TTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAAAGAAGCAGCTGAGATGAACAAGAGGTCATTCAAGTAT
GCATGGGTGCTTGACAAGCTTAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTTGAGACCACAAAGTACTAC
TGCACTGTGATTGATGCTCCTGGACACAGAGATTTCATCAAGAACATGATTACTGGTACCTCTCAGGCTGACTGTGCTGTCCTCATCATT
GACTCCACAACTGGTGGTTTCGAAGCTGGTATTTCCAAGGATGGACAGACCCGTGAGCACGCATTGCTTGCTTTCACCCTTGGTGTCAAG
CAAATGATTTGCTGCTGTAACAAGATGGATGCTACCACCCCCAAGTACTCCAAGGCTAGGTACGATGAAATTGTCAAGGAAGTTTCTTCC
TACCTCAAGAAAGTAGGATACAACCCTGACAAAATCCCCTTTGTCCCCATCTCTGGTTTTGAAGGAGACAACATGATTGAGCGATCAACC
AACCTTGACTGGTACAAGGGCCCAACCCTACTTGAGGCTCTTGACCAGATTAATGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTT
CCACTTCAGGATGTCTACAAGATTGGAGGTATTGGAACTGTACCTGTCGGTCGTGTTGAAACTGGTGTGATTAAGCCTGGTATGGTTGTC
ACTTTTGGTCCAACTGGTCTGACCACTGAGGTTAAATCTGTGGAGATGCACCACGAGGCTCTTCAGGAGGCACTTCCTGGTGACAATGTT
GGGTTCAACGTCAAGAACGTTGCAGTTAAGGATCTTAAGAGAGGTTACGTTGCCTCCAACTCCAAAGATGACCCAGCGAAGGGTGCTGCT
AGCTTCACTGCCCAAGTTATCATCATGAACCACCCTGGTCAGATTGGAAACGGATATGCCCCAGTGCTCGACTGCCACACCTCCCACATT
GCTGTCAAGTTTGCTGAGATCTTGACCAAGATTGACAGACGTTCTGGTAAGGAACTTGAGAAGGAGCCCAAGTTTTTGAAGAATGGTGAT
GCCGGTATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTTGAGACCTTTGCTGAGTACCCACCATTGGGACGTTTTGCCGTGAGGGAC
ATGCGTCAGACTGTTGCTGTTGGAGTTGTCAAGAACGTTGACAAGAAAGACCCTACTGGTGCTAAAGTCACCAAGGCTGCCCAAAAGAAG
AAGTGATGTGTTTTTGATGAGATTCTGCATTGATGAACTAGTTTTGTTTAATTGCATTAGCTATTTTCAATTTTGTTTTGAACATTTTAC
CAGTCATAGATATGGCTCCAGAAGCTTTTGTCATGGTTCTCTAGCCTCTTTTGAGGATAGTGGAGTTATTGAGCAATTTGGTTTGATCCA
AGTTGCTTGATGAGCTGTGACAAAAGCATCTCTGATGCCTTTCTACTTTCTGGTTTTTATAGCGAATTCCCAGATAAGATGCTGAGACGG
TTTTAATATGTTATGCTTTTTAAGTTATCTTTTATCTTAAAAAAAAAAAAAAAAAAAAAAAATGGTTTGAGTTGTGTTCATTGCAAGGTG
TTCTTCTCTGTGTCATTGGAGATTTGCCATTGCTGAACTGTTGCTTTGATTGTCTATGCATTTTTCAAATGAGTTTCTTATACGTTTAGA
TTTTGTATTTTTTCTATTCGAGTCTTTCCCCATAGTTGTGGGATCTCTTAAAGACAGGTGACAGTGTCATTTCATTCATGGTCCAGTGTA
AATACCAGCTATACCTAAGATGTAACTTAAGACTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (37)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	7
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	43
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	11
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	13
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	3
Solanum lycopersicum	LC	Leaf Mature leaves	5712	4
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	21
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	12
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	29
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	23
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	33
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	8
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	4
Solanum lycopersicum	cLER	leaf 4 weeks	5127	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	10
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	6
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	18
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	9
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	11
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	36
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	7
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	11
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	14
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	13
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	21
Solanum lycopersicum	cTOS	suspension cultures	8026	5
Solanum lycopersicum	cTSB	seed	1880	2
Solanum lycopersicum	cTSC	seed	2256	5
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	11
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	3

mRNA member sequences (412)

Alignment image suppressed for unigene with 412 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101378	Heavy metal transport/detoxification protein - Biological Process: metal ion transport (GO:0030001) - Molecular Function: metal ion binding (GO:0046872)	495
2	118470	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525)	104
5	128992	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal Elongation factor Tu C-terminal - Molecular Function: GTP binding (GO:0005525)	75

Preceding Unigenes (1)

Unigene	Build
SGN-U212846	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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