Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U575333 and SGN-U596981 in the current build, Tomato 200607 #2

Unigene SGN-U314167

Unigene Basic Information

Unigene ID:	SGN-U314167
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314167
mRNA sequence:	Length: 1665 bp

>SGN-U314167 Tomato 200607 #1 (39 members)
GGCGATTGGCGGCCAATCGGCCGAATTGAGATCGACTCCACTCCAATTTCATTTCGGAATCCCATACAAACAATCTTGTCGACGATGGCA
ACGCCGATGGCTGAGGATAGCAACTTCGAAGATGACCAGCTCCATGCTATGTCCACTGAAGATATTATTAGGGCTTCTCGCCTTCTTGAC
AATGAAATTCGAATCATAAAGGAAGAGCTGCAGAGGACGAATCTAGAGTTGGATTCATTCAAGGAGAAGATAAAGGAGAACCAAGAAAAA
ATTAAGCTCAATAAGCAACTTCCTTACTTGGTCGGCAACATTGTTGAGATTTTGGAAATGAATCCTGAAGAAGAAGCTGAGGAGGATGGT
GCAAATATTGATCTCGACTCACAAAGGAAGGGCAAGTGTGTTGTACTGAAAACATCCACACGCCAGACAATTTTCTTGCCTGTTGTTGGT
CTTGTTGATCCTGACAACTTAAAACCTGGTGATCTGGTTGGAGTAAATAAAGACAGTTATTTGATATTGGACACCTTGCCATCTGAATAT
GATTCTCGGGTAAAGGCAATGGAAGTTGATGAAAAGCCAACTGAAGACTACAATGATATTGGAGGCTTGGAGAAACAGATTCAAGAACTT
GTCGAGGCAATTGTGCTGCCTATGACACACCAAGAACGGTTCCAGAAATTAGGTGTTCGTCCTCCAAAGGGAGTCCTTTTGTATGGGCCT
CCTGGGACTGGGAAAACCCTGATGGCCAGAGCCTGTGCTGCACAAACAAATGCTACTTTTCTCAAGTTAGCGGGACCTCAGCTTGTGCAG
ATGTTCATTGGAGATGGAGCAAAACTTGTTCGTGATGCTTTCCAGCTGGCAAAAGAGAAATCACCTTGCATAATTTTCATTGATGAAATT
GATGCTATAGGCACAAAGCGTTTTGATAGCGAAGTTAGTGGGGATCGAGAGGTCCAACGAACTATGTTGGAGTTACTTAACCAGCTCGAT
GGTTTTAGCAGCGATGATCGGATTAAGGTGATAGCAGCAACAAACAGAGCTGATATTTTGGATCCTGCTTTGATGCGATCTGGTCGTTTG
GATCGTAAAATCGAATTCCCCCACCCCACAGAGGAAGCCAGGGCTCGGATCCTGCAGATCCATTCCAGAAAGATGAATGTCAACCCAGAT
GTTAACTTTGAAGAATTGGCTCGGTCGACAGATGATTTTAATGGGGCACAGTTGAAAGCTGTATGTGTTGAGGCAGGCATGCTAGCACTC
CGTCGCGATGCCACTGAGGTAACTCATGAAGACTTCAATGAAGGTATCATTCAAGTTCAAGCCAAGAAGAAAGCCAGCTTAAACTACTAT
GCCTAAACTTACTGCAGGCCCCATGGCAAGCAGCTTTTAGCTTTTCAAAGTTGAACATGGCCACTGCCTGCCACACCCCCAAACCCCTTT
TAGTATCCCCCCTCTTCTTTCTTTCTGGGCCGGTAGGGGGTGGGGATAGAAGCTTTGCACATTAGCCTCTGTGCTCTCTTGCTTGTGGAT
TACTGATAGTATGTGGATCTCTTCTTGAATTTGTTCAGTTGTATACTTTCCTGCTGTATGACTTCATGACCTAGAATAGCCTTGAGCTAT
ATTGGCAATCGAAACTTCGTTGATTTGGACAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ma1	LeMA-1 putatve Mg-dependent ATPase 1

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	3
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (39)

Alignment image suppressed for unigene with 39 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 2 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101385	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524)	403
2	118424	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	236
5	129002	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	70

Preceding Unigenes (1)

Unigene	Build
SGN-U215016	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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