Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U568661 in the current build, Tomato 200607 #2

Unigene SGN-U314062

Unigene Basic Information

Unigene ID:	SGN-U314062
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314062
mRNA sequence:	Length: 1796 bp

>SGN-U314062 Tomato 200607 #1 (28 members)
TTTTTTAATTGAAACATTTCTCTAGAATGATCGTGGGTTCAAATTTACAGTACTACATCGAGGGAGGGAAGTGAAGTACGAAACTTTAAC
AGCGCAAGCAGTGGGAAGAATATTTCTGCTGCCATGGTATCAACGGAAGTTGATTCAGAGAAGAACCTTCTCCACCGAAAACAATCAGTT
TACCAATCTTTGGACGAGAGTTTTGGGATTCAGAAGGAGGTTTACAGGGGTCAACAATACAGCCAAATATATTTTGCTAGGCTCCATTTG
ATGCGAACTCTCCTTTACTCTATCATTCCCAATTGGAAACCCCATTTACCTGTCTGTACTGTTCTAGGATTAGAGGAAGGCAAAGAATGC
ATTATAGTTGGGACACTCTACAAGCACATGAAGCTTAAACCTTCTATTCTGGATGAGTACTCTAAGGAGAGATCTGCTTCACCACTTGTA
CAACGTCATAACTTTATGCACCTAGATGATAATTTAGTTCTGGAAGATGAGAGCGGAAGAGTCAAACTAAGTGGTTGTTTGCTGCCGTCT
ACATATGTAACAGGAAATATTATTGCATTGCATGGAAAAGAAACTAGTGCAGGTGAATTTTTTGTTGAAGATGCTCTAGAGGCTGGCCTA
CCACAACAGATAGAGCAGCCAATTCAACTAGGTGAAGATAAATATGTGGTTTTCATCTCTGGTTTGAGTGTTGGAAGAAGCTCTTCTAAT
CCTCTCCAATTTCAACTTTTAGTTGATCACATTACTGGACATTTAGGAGATGAGAAGGAACAAAATATTGCAGCTCAAATAGTTCAAGTT
GTTATTGCTGGAAACTCTGTTGAAGTTCCTCATGGACTTCTCAACGGACAGAATTTGGGGTCAAAGGACCAGTCCAGATTGTTTGAGCCA
ATTAAAGAGCTTGATATTTTGTTAACTCAGATTGCAGCAAGTATACCTTTGGATATCATGCCAGGGTCCAGTGATCCAGCAAATTTCTCC
CTCCCTCAGCAGCCTCTCCATAGATGCCTTTTCCCTGGATCATCAGCGTATAACACTTTCAGATCTTGCACGAATCCACATTGTTTTGAA
CTTGACAACATCAGGTTCCTAGGTACATCTGGTCAAAATATTGATGATCTTGGCAAGTATTCGGAGGCAAACAACAATATTGACTTTATG
GAGAGAACATTGAGGTGGAGACACCTAGCACCAACAGCACCAAATACCCTTGGTTGCTATCCCTTCACTGATAGGGATCCTTTCTATATC
GAAACATGTCCTCATGTTTATTTTGTTGGCAACCGGGATAAATATGAATCTCGCTTGATAAAAGGATCAGAAGGACAGATGGTAATGCTT
ATTTGCATTCCTAGATTTGCAGAGACTGGAGTTGCAGTGGTGTTGAATATCAGAAACCTTGAGTGCCATACGCTCAGCTTTGCCACTCAA
ATCAACTCATAATAGCAAGGACCTCAAGGTTTAATAACAAATTCTGGGGAAAAAAAGGTTGCATTTGATGTGTTTGAAGGTTTAAGAAAA
TATAATTTGTCTAAACTCTCTTCAATCATGTCTGTTAAATTGATTTCTCTTATGTAATATTTGTATCTCTTTAAATTGGATTCTCTCGTG
ATAGTCGAAACCTTTTTATTATCTACTCACTCAAATGACATCACAATTTTAACTGTTACTGTTTGATCTTCTGCAATTCTTATTGAGTTG
TGTATTCTGAGGAGTAATGTAACAACGGGTATTCATTGCATGTCAGTAATAGTATATTTTAAAGGTTAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (28)

Alignment image suppressed for unigene with 28 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 3 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	103539	DNA polymerase epsilon subunit B - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed DNA polymerase activity (GO:0003887) - Cellular Component: nucleus (GO:0005634) - Biological Process: DNA replication (GO:0006260)	6
2	121665	DNA polymerase epsilon subunit B - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed DNA polymerase activity (GO:0003887) - Cellular Component: nucleus (GO:0005634) - Biological Process: DNA replication (GO:0006260)	6
5	131887	DNA polymerase epsilon subunit B - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed DNA polymerase activity (GO:0003887) - Cellular Component: nucleus (GO:0005634) - Biological Process: DNA replication (GO:0006260)	6

Preceding Unigenes (1)

Unigene	Build
SGN-U214001	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: