Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U576925 in the current build, Tomato 200607 #2

Unigene SGN-U313944

Unigene Basic Information

Unigene ID:	SGN-U313944
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313944
mRNA sequence:	Length: 1990 bp

>SGN-U313944 Tomato 200607 #1 (21 members)
TCTGGTGTAGCTTCCATTTCTTTTGGCGAAGATGTCTGTTAAGGTTCTGAATCCAAATGCAGAGGTGCTCAATAAATCTGCGGCGCTTCA
CATGAACATCAACGCCGCCAAGGGTTTACAGGATGTTCTAAAGACAAATCTTGGTCCTAAAGGAACCATCAAGATGCTTGTTGGTGGTGC
TGGTGACATTAAGCTTACCAAGGATGGTAATACATTGTTGAAAGAGATGCAAATTCAGAACCCAACTGCAGTAATGATTGCTAGGACTGC
TGTAGCTCAAGATGATACTAGTGGGGATGGTACTACGTCTACTGTGCTTTTCATTGGGGAGCTCATGAAACAATCTGAACGATGCATAGA
TGAAGGGATGCATCCTCGTGTGCTAGTGGATGGTTTTGAAATTGCAAAAAGAGCAACTCTACAATTTCTTGAAAAATTTAAGACTCCTGT
AGTAATGGGTAACGAGCCAGATAAAGAGATATTGAAGATGGTTGCAAGAACGACATTGAGAACAAAGTTGTATGAGTCACTGGCTGATCA
GCTGACTGACATTGTTGCAAATTCTGTGCTCTGCATTCGCAAGCCTGATGAAGCTATTGATCTTTTTATGGTTGAGATAATGCACATGCG
TCACAAATTCGATGTAGACACTCGTTTGGTGGAGGGCCTTGTACTTGATCATGGTTCAAGACATCCAGACATGAAAAGGCGAGCAGAGAA
CTGTTACATTTTGACTGCTAACGTCTCTCTTGAATATGAGAAGAGTGAAGTGAATGCAGGTTTTTTCTACTCAAATGCAGAGCAGAGAGA
GGCGATGGTTGCTGCAGAACGGCGTTCTGTTGATGAGAGGGTGCAAAAGATAATTGACCTAAAGAACCAGGTCTGCGCTGGAAATGACAA
GAATTTTGTTGTTATCAATCAGAAGGGGATTGATCCTCCATCTCTAGATCAACTTGCTCGGGCAGGAATAATCGCACTCCGGAGGGCAAA
GAGGAGAAATATGGAACGTTTGGTTTTGGCTTGTGGCGGGGAGGCAGTTAACTCTGTTGATGATTTGACTCCTGAGTGCCTTGGCTGGGC
TGGGCTGGTCTATGAGCATGTTCTTGGTGAAGAGAAGTATACCTTTGTAGAAAATGTTAAAAATCCTCATTCTTGTACAATTCTTATCAA
AGGGCCTAATGACCACACAATAGCTCAAATCAAGGATGCAGTTCGTGATGGACTAAGGGCAGTAAAAAATACCATTGAAGATGAAGCAGT
TATACTTGGTGCCGGCGCCTTTGAAGTTGCGGCTCGACAACACCTTATTAACGAAGTGAAAAAGACTGTCAAGGGGCGTGCCCAACTTGG
AGTGGAAGCTTTTGCTAATGCCCTCCTTGTTATACCAAAGACACTTGCTGAGAACTCTGGCCTTGATACTCAAGATGTGATCATTGCTCT
AACGGGAGAGCATGACAAAGGAAATGTTGTCGGACTAAATCAACGCACTGGAGAACCTGTAGATCCACAAATGGAGGGGATATTTGATAA
TTATTCCGTGAAGCGTCAGATTGTTAATTCTGGGCCTGTTATAGCATCTCAGCTGTTACTTGTTGATGAAGTAATTCGTGCTGGAAGAAA
CATGAGGAAACCAACTTAGTTGTTTCTGTCTGAAAATACTTCACTGATTTTCCTGTACTTTTCATCTTGCGATTGTTTTGGAATTATCAG
AGGAAGGATGAAAAAACGAAGGTGGAGATAGATGAAATAGGCGTTGAGAGTAGGGTGTTTTCATTGGTCAGTTTGACATTGTTCTGAAAG
ATTTTGCTTGTGTAATTTCTTGGTTTTCCAGTTTTTCTAATTTTCCAATGTCATATTGAAATAAAATTCGATATGGTTTGGTTTTCTATT
TTTCAACTTAAGTTTTGTATAACTTTAAGTTGTACTTTTCTCGAGTTATATCTTCTATCAACCAATATCTAAATAGACAATTTAAATCTG
GAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	7
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101419	Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	214
2	118577	GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	50
5	130709	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) Chaperonin TCP-1 T-complex protein 1 zeta subunit	9

Preceding Unigenes (1)

Unigene	Build
SGN-U215477	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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