Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U565008 and SGN-U595429 in the current build, Tomato 200607 #2

Unigene SGN-U313929

Unigene Basic Information

Unigene ID:	SGN-U313929
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313929
mRNA sequence:	Length: 2330 bp

>SGN-U313929 Tomato 200607 #1 (59 members)
GAGGAGTTATCTTTCCTCTGTCAACTTTATCAGGTTCTTGCTTCTTTTCTGAGCGTATCAACATGGCGACTTCATCAGTATGCATAGCAG
GAAATGATTTGTCCACCCATAGAACACAGAAAGTTTTTAGGAAGGAGATCTATGGCAGAAAAATTTTGTACTCCTCAAATCTTCCATCAT
CTAGGAAAACATCAAGAGTAGTTGTAAAAGCATCCCTTCAGCAAGGGCCACATGAAGGAAGAAGAGGCTTTCTTAAATTATTGCTTGGAA
ATGTTGGGCTTGGAGTGCCTGCTTTGTTAGGTAATGGGAAAGCCTATGCTGATGAGCAAGGTGTTTCTAACTCAAGGATGTCTTATTCTA
GATTTTTGGAGTATCTGGACAAGGACAGGGTGCAAAAAGTAGATCTGTTTGAAAATGGAACCATAGCTATTGTAGAAGCTGTATCTCCAG
AATTGGGGAACCGAGTGCAAAGAGTTAGGGTACAACTACCTGGACTCAGCCAGGAACTCCTTCAAAAGTTCCGGGAAAAGAACATTGATT
TCGCTGCTCACAATGCTCAAGAGGACTCAGGTTCTCTCATATTCAACTTGATTGGAAATCTGGCTTTCCCACTTATTTTGATTGGTGGTC
TTTTCCTGCTATCAAGGCGGTCTAACGGAGGAATGGGAGGTCCTGGTGGGCCTGGAAACCCACTAGCATTTGGTCAATCAAAGGCTAAGT
TCCAAATGGAGCCAAACACTGGTGTGACATTTGATGATGTTGCTGGTGTAGATGAAGCAAAACAAGATTTTATGGAGGTCGTAGAATTTT
TGAAGAAACCTGAGAGATTTACTGCAGTAGGGGCTCGTATTCCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGC
TAGCAAAGGCAATTGCTGGTGAAGCGGGTGTTCCATTTTTCTCAATTTCAGGTTCAGAATTCGTTGAGATGTTTGTTGGTGTTGGAGCCT
CTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTCCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAG
GGACTGGAATTGGAGGAGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGGTTTCGAAGGAAATACTGGTA
TAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGACTCTGCTTTGCTGAGGCCAGGACGATTTGATAGACAAGTATCCGTGGATG
TCCCAGACATCAAGGGAAGAACAGAGATCTTAAAGGTTCATGCCGGCAACAAGAAGTTTGATTCAGATGTGTCTCTTGAAGTTATTGCCA
TGAGGACACCGGGTTTCAGTGGAGCAGATCTTGCTAACCTCTTAAATGAAGCAGCCATTCTTGCAGGTCGACGTGGTAAGACAGCAATCG
CATCCAAAGAGATTGATGATTCAATTGATAGGATAGTGGCTGGTATGGAAGGAACAGTCATGACTGATGGCAAGAGCAAGAGTCTGGTGG
CATATCACGAAGTTGGACATGCCATCTGTGGAACTCTCACTCCAGGGCATGATGCTGTACAAAAGGTCACTCTAATCCCACGTGGTCAGG
CAAAAGGTTTGACCTGGTTCATTCCTGCAGATGACCCAACCTTAATATCCAAGCAACAACTCTTTGCTAGAATTGTTGGTGGACTTGGTG
GAAGAGCTGCAGAAGAAGTGATCTTTGGTGAACCTGAAGTGACCACTGGTGCTGCTGGTGATTTGCAGCAGATCACTGGTTTGGCAAAAC
AGATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAATGA
TGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGA
GCCAAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTA
TTCTCTCAGAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATAC
TGCAACTTGTACAATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTT
TTGTGCATTTGTGTATGAAGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	6
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	23
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSD	seed	1504	1

mRNA member sequences (59)

Alignment image suppressed for unigene with 59 aligned sequences.
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Markers Information (0)

Expression Data (6)

Annotations (manual: 1 | blast: 2 | go: 10 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101385	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524)	403
2	118424	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	236
5	129073	AAA ATPase central region - Molecular Function: ATP binding (GO:0005524) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	47

Preceding Unigenes (1)

Unigene	Build
SGN-U215190	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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