Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578366 in the current build, Tomato 200607 #2

Unigene SGN-U313830

Unigene Basic Information

Unigene ID:	SGN-U313830
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313830
mRNA sequence:	Length: 1297 bp

>SGN-U313830 Tomato 200607 #1 (33 members)
TTTTCAAAATTAACTAAATTTAGGTTCGGAAAAGCCGAGCCTTAGGCTCGGACATTCCTCGTTCACTTCACCGTTTTTCAAAAACATAAA
TATCAATCTTTTCACAATTTTCTCGGCAGTACAGTCGTTTCTTTTTCACTCAGAGTATTGGGTTGATTGAATCGGAGCTCTGAATCAGAA
AATGGCCGAGCACGTTGAGAATTCGGATCCTAAAGGGGAGTCGTTGTTGGAGAAGATCGCCGACAAGTTTCACGGTGACGATTCCTCGTC
GTCGTCGGAATCAGAAACTGAGACGAGGAAACCGGCAGTGAAATCGGAGGTTGACCCGGAGACGGAGACGTTGAAGAACAAAGTTTGGAG
GTTATTCGGAAGAGAAAAACCGGTTCACAAGGTTTTCGGTGGAGGCAAACCTGCTGATGTTTTCTTGTGGAGGAACAAAAAGATATCTGC
TACTGTACTTGGTGGAGCAACTGCTATCTGGGTTCTTTTCGAATTGCTCGAGTACCACCTGCTCACTTTAATCTGCCACATTTTGATCAT
CACTCTCGCAGTCTTGTTCTTGTGGTCAAATGCAACCACCTTTATTAACAAAAAACCTCCTCATATCCCAGAAGTCCACCTTCCAGAGGG
CCCCATCCTTCAGGTGGCTTCTGCCCTGAGGATCGAAATTAATCGCGCTCTTGATCTGCTGAGAGAAATTGCATCAGGGAGAGAACTGAA
GAAGTTTCTTGCTGTGATTGCTGGTTTGTGGATCCTCTCAATTGTTGGTAGCTGGTGCAACTTTTTGACTCTGTTCTATATATCATTTGT
GCTCCTCCACACCGTTCCTGTTCTTTATGAGAAATATGAAGATAAAGTGGATCCATTAGCCGAGAAAGCAATGCACGAGATCAAGAAGCA
ATATGCTGTGTTTGATGAAAAGGTTTTGAGTAAAATTCCAAGAGGACCACTGAAAGATAAGAAGAAAGATTAGATGTGGTGGTGCTTCGT
TCCGCTAGAAAGGTTTCAGAATGTGATAGTACTTCTCTTGTATTTACGTGAGGCTGAGTGTTATCCTTGTATTTGGGGTTTTATTAATTG
GGGATAAATCTAGAAACAGTTGGGAGGTTTAGTCTGTTAGGTGTGAGTCTGTATCTGACTGTCGTTTCACAAGATGTCATTGTATAAGTT
CAACAAAATTTACATTGTGTTCTTCTGCATTTGTTTGTATTGCTTTCACTTGTATCAAAGCTGGGATGGTCTAACCTGTTTGATCCATAA
AAAAAAAAAAAAAAAAAAAAAACTCAGACTAGTTCTC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
TOMWIPII	proteinase inhibitor 2	proteinase inhibitor

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	14
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (33)

Alignment image suppressed for unigene with 33 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101613	Reticulon - Molecular Function: molecular function unknown (GO:0005554) - Cellular Component: endoplasmic reticulum (GO:0005783)	59
2	118554	Reticulon - Molecular Function: molecular function unknown (GO:0005554) - Cellular Component: endoplasmic reticulum (GO:0005783)	56
5	129043	Reticulon - Molecular Function: molecular function unknown (GO:0005554) - Cellular Component: endoplasmic reticulum (GO:0005783)	54

Preceding Unigenes (1)

Unigene	Build
SGN-U214271	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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