Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578145 in the current build, Tomato 200607 #2

Unigene SGN-U313824

Unigene Basic Information

Unigene ID:	SGN-U313824
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313824
mRNA sequence:	Length: 2335 bp

>SGN-U313824 Tomato 200607 #1 (61 members)
GGCGATTGGCGGCCAATCGGCCGAATTGAGAGATCTGAAGAGGGGTCTGACTAGTTTCTTCTCTCAAAAAATCTCTCTTTTGAACGGCCC
TCCCTAATTTTTGTCAAAAAGGGTATAATAGAGGGAGGAGTAACAGTCTTTTCTCTAAATCTCTGCATTTAGTTTTTGCTGTACTCAGAT
CAGGGACTTCTCGGTTTGTATTTCATTGAAATATGGGTGTAGAGGTGGAAGCTAAGTTAGTTCATGTTCCAGTTGAAGCTGGAACTGAAC
AGATCAATCTTCTGAAAGAAAATGGAAAGCCGAATCATGTTTCAGGGATTACGGAGCCAATAAAATTCGGCTCTCATGGGACTGAAGAAC
CTAAGGAGGAAATAAGTAGAATTCCTGTGAGCAATGTTCCAAAGGATGCGGTTGAGGATTGGCCTGAACCTAAGCAGGTCCATTCGTTCT
ATACTGTTAAATTTCGGAGATTTGACGACCCTAAACTGAAAGCCAGAATTGAACTGGCTGAAAAAGAGCTACAGAAAAAGAACCAAGCTA
GATCTCAGATCATTGAAAAATTGAAGGCCAAAAGGGCTGAAAAATCAATTTTCATTGAACAAAGGAAAGCCCTCAGTGCTGAGAATAAGG
AATTTCGGAGTGCTATTGATGGTAAGATAAAGGAAATGGCACCTCTGCATGAGGCTTTGGGCCAGCTCCGCGGTTCTAGGAATGCAGGCC
GAGAGAGGGGTCCTACAGTGTGTTCATCTGAGGAGGAGCTCAATCATCTTATCAAGGGTCTGCAATACCGCATTCAGCATGAAAGCATTC
CTCTGAACGAAGAGAAGCAAATTCTTCGGGAAATCAAACAACTTGAAGGAACAAGGGAAGATGTTAAAAAGGTTGCTGCTGCAAGAGCAC
AGATTCATGAGACGATGGGTGAAAAAGAATCAATCCAGAGTCAGGTCAAACTTATGAATGTTGGCTTGGATGGAGTTCGTAAGGGACAAC
AGGAAGTCAAGGGCAGGCTTAAGATAATAGATGATCAGATTGATGCCATAAACAAACAGATCGGTATATTGGATGAGGAATTGAAGGACG
TTGTGGAGAAGAGGGACAAGACTTATGAACATATTCTGGAATTGAGAAAACAGCGTGAAGAAGGGAATTCTTCTTTCTATCAAAACTCCA
ACGTGTTGCACAAAGTGAAACAACTTGCTGACCAAAAGGATGTTGGAGCCCTTAAAGAGCTTTCAGTTACAGAGGTCGACAAGTTCATTT
CTCTTTGGTGTGGTAGTAAGTCTTTTAGAGATGACTATGAGAGGAGACTCTTGCAGTCGCTTGATATTAGGCAGCTGAGCAGGGACGGCA
GGATGAGGAATCCTGATGAAAAGCCACTGGTGTTACCAGAAGCACCTACTGTCTCCCGTGCTGAAGTTCCAGCAAGAGCTAATGCAAAAC
CCGTTAAGGAAGATCATGCACCCGTTGATGCTGCTCCGATTCAGAAAGAACAGCAAGAGGTTAGCGGCAAGCAGCTGAATGATGCTCGTG
GTAAAAACTCAAAAAGCACAGAGAAAAAAGCTGTTGTTGATGATGATGAGGAAATCTATGGTTTGGACCTACACAAGGATTCTAAGCCCA
AGAAAATCGAAATTGATGAGGCAACACTGAAGGAGATGAAGAAAGAGGAGGAGATGGCAAAAAATAAACAGGCTATGGAGAGGAAGCGTA
AGTTGGCCGAGAAAGCAGCTGCAAAAGCTGCAAAGAAAGCTCAGCTAGAAGCTGAAAAGAAGCTCAAGGAACGTGAGAAGAAAGCAAAGA
AGAAGAGCGGAGCTTCTGCTGCTGGTCAGGAACCAATCGAGGAACCAACTGAAACACCCGAGGAAATTGCTGAGGAAGAAAATGCAGAGG
AGACTGTTGAAACAGCCGTTGCACCCAAGGTCAAGGCACGGAAAGAGAACACCATCAGGCACAGAGCAACACGTGCAAGAGGCTCCGAGC
TTCCCAAAGCTATACTAAAGCGCAAGAAAGCAACAAACTACTGGCTATGGGCAGCTGCTCCTGCTGCACTCGCGATTCTGGTACTTCTAG
TCATCGGATACATGTATCTTCAAAAGTAGAAAGAGGCAGGTGGGGAGAGACAAAACAAAAAACAAAAACTTTGTTTTTAGTGTTTTAATT
TTTTGTTTACAAATACTGCAATAGCAAGTACTGTTTAGTTTGATCATAACAATATTTCTTTTTCTTGCATCCTATATAGTTTAGGATGGA
AAACTCATAAATGTTTTGCTGGTAGATGTGCGGCCTATCTTGAGATTACTTACTGGAAAAAAAAAAAAAAAAAAAAAAAAACTCG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	7
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	6
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	6

mRNA member sequences (61)

Alignment image suppressed for unigene with 61 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101367	Kinesin motor region - Molecular Function: microtubule motor activity (GO:0003777) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: microtubule associated complex (GO:0005875) - Biological Process: microtubule-based movement (GO:0007018)	846
2	119067	Chorismate mutase - Molecular Function: chorismate mutase activity (GO:0004106) - Biological Process: aromatic amino acid family biosynthesis (GO:0009073) Prefoldin	21
5	129649	Prefoldin	17

Preceding Unigenes (1)

Unigene	Build
SGN-U213802	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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