Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U568869 and SGN-U568870 in the current build, Tomato 200607 #2

Unigene SGN-U313724

Unigene Basic Information

Unigene ID:	SGN-U313724
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313724
mRNA sequence:	Length: 1683 bp

>SGN-U313724 Tomato 200607 #1 (69 members)
CTTGGTTCCTCATTTGATAGGTATGTCTATTATTTTCCTCTCTATTTTATCTTTTTTTTTTTTTTGCTCTGAGTGTTAGGTTTTGCTTGT
ATGTGGATTGTTAATTTGATGATGAATTGGGTTGGCTTTGGGGTTATTTGGTAGACGGATTAAATTATCTCGAGATTATAATCATAGAAT
TATATTTCCGGCCTAATTTATACTTCCGACAGCTTAGCCAAGACCTTTAGGTTTTTTTGTGTGGAATTAGTTTAATTATGAGTAATCCTG
AATTTATTTTGACATTAGACATAGAGGTGATCGAGGATCTTAATTTAATTGTGATTGTGTTGGGTTAATTGATTTTTATACAATGGATTG
TTGAATTTGTTTTTTTTTTAATACGTTAGGTGCTTGGTTCCTCATTTGATAGATTGATTTGCGTTTGTTTGCTGAAGGCACTGTTTGGAT
TTGGATTTGGATTTACACAACAACCATTGAATTTTTACTAATTTGATATATTCGATTATTGTTTCATTGATTGAGGTTTGATAAATAGTT
TCTCTATGTTAGTTTCAAATTATTCATGATCCACATGCGTCGAGTTCGCATTATGCACTCTTTCTCCGTTGTCTTCCTGTACTGGTTCTA
TGTGTTTTCATGAATTAGCCCACCTCAAACCCTTGAACCCTCCTCCTGTTTGATTTAGAAATTAGAAGTACCAAATTCAGAAACCGAACG
AGAAAAAAGTAGTTACCTCTCCTTTTTTGAATCCCTATTTTTATCGAACAAACTTCCCCATTGAATAAACAACACAAAGACATGGCTTCG
ACTCAGCAACCAGCTAGTTCGGGTTCTGATGGCCAGCGATATGCTACTAATGATGAGAGAAAACGAAAGAGAATGGAGTCTAACCGTGAA
TCTGCAAGGCGGTCACGGAAGAGGAAGCAGCAGCATTTGGAGGAGTTGATGAGCCAATTGACACAGCTGCAGAATCAGAGCACTATCTGG
CGTGAGAAGATTGAATCTGTTGGAAGAAACTTCCACACCCTTGATGCGGAGAACAATGTCTTGAGGGCTCAAATGGCTGAACTGACTGAA
CGCTTAGATTCTCTGAATTCCCTCACTCGTTTTTGGGCTGATGCTAATGGACTTGCTGTCGACATCCCTGAAATTCCAGACACTTTGCTT
GAGCCTTGGCAGCTCCCTTGCCCAATTCAACCCATTACTGCCTCTGCTGACATGTTTCAGTTTTGAGCACAACCTGTGTGTATGATTGGA
CTACCATGATCCTAGCTCTCGGGTTCTTGCTTAACAGGTGCTCCTTGTATCCTCTTCGATTCAATTACATGCAACAGCTGCAGCGAAAGA
CAACCTTGTTACTATTTCCCGAAGTTCTCCTTTATGCAGTCACTGCATTTTGTTTATTTGCAATGTGAGTTAGTAGCTTTTCTTGTGCTC
TCTTTGTGTCAGTTTATGACTATAGATTCTCTATGTAATATTTAGCTTCATGGATTAGCAGTTTCTAGTACTTTGTCAATGATCTTCAGT
CTCTAGTTTATAAATAAAAATCTTAAGTCGTGTGAACGATATGACCCTTTTTTGTTTCTGCAAGATTGCTCTTATTATTCAACTAGTTGT
GAGTAATTGTGTTTCTGTTTGGCACAATGTTTGCCACAGATTAACTTTGTTCCAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AF176641	bZIP DNA-binding protein	DNA binding

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	17
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	9
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	15
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (69)

Alignment image suppressed for unigene with 69 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 4 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101428	Basic-leucine zipper (bZIP) transcription factor - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Molecular Function: protein dimerization activity (GO:0046983)	192
2	121332		7
5	131555		7

Preceding Unigenes (1)

Unigene	Build
SGN-U213576	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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