Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578037 in the current build, Tomato 200607 #2

Unigene SGN-U313703

Unigene Basic Information

Unigene ID:	SGN-U313703
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313703
mRNA sequence:	Length: 1191 bp

>SGN-U313703 Tomato 200607 #1 (66 members)
GATACGAGCAAAATAGAAATTCTAGTAGTTCTACAGATCTTAGAAACCCTAATTATTATATTCTGTAAAGATGGCGACTGAAGAGCCGGT
TGTAGCAATCGAGCCTGTGAATGAACCGATGGTCGTAGCTGAACCTGCGACGGAAGAAAATCCACCGGCGGAGACTGATGAACCAAAGAA
AGAGAAGGAGATCAAGGCGAAAAAATCATCTGCTCCGAGGAAGAGAAATCCTCCGACTCATCCTTCCTACTTTGAGATGATTAAGGAAGC
GATTGTAACATTGAAGGATAAAACTGGATCGAGTCAGTATGCGATCACAAAGTTCATTGAAGATAAGCAGAAAAATCTTCCATCAAATTT
CAGGAAAATGTTGCTTGCTCAATTGAAGAAGCTTGTGGCTTCTGGTAAACTTGTCAAGGTGAAGAGCTCCTACAAGCTTCCAGCTCCAAA
GGCAGCTGCTCCTGCTCTTGCTAAGAAAAAGTCCATAGCTAAGCCAAAAGCAGCACAGGCAAAGAAGGCCACCAAGGCAAAGCCGAAGCC
AAAACCAAAGGTTGCTGCTCCAAAGGCCAAAACTGCTACCAAATCAAAAGCTAAGCCAAAGCCTGTTGTTGCTGCCAAAGCTAAACCAGC
TGCAAAGCCTAAGGCAGTTGTAGCAAAGCCGAAAGCAGCTGTAAAGCCTAAAGCCCCTGTAAAAGCTAAGGCTGCTGTAAAGCCAAAAGC
GGCTAATGAGAAGCCAGCTAAGGTAGCAAGGACATCTACTAGGTCGACTCCGTCGAGGAAAGCTGCACCGAAGCCAGCTGTGAAAAAGGC
ACCGGTGAAGAGTGTGAAATCTAAGACCGTGAAGTCGCCGGCGAAGAAAGCATCCGCCAGGAAGGCAAAGAAGTGATCGAATGTAGGAGG
AAGGGTAGCATTGTAAATTTCTTGGATCTTTGTGGGTGGTTTGTATCTGCGGCCCAATATAGAAAATAGTATTTTAAATTCCAGTTGTAA
TTTTCGTTTTTTTTATTTTATATAATAATCCATTTTAGTTGAGTTTATGCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGGGGGGGGGGGGGGGCCCCCACCTTCACAAAANGGGGGGGGGGGGGGGGGCCC
CCCCCCCCCCCCTAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
h1	histone H1

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	12
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	6
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	5
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	8
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (66)

Alignment image suppressed for unigene with 66 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101473	Myb DNA-binding - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634)	112
2	118777	Histone H5 - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) Winged helix repressor DNA-binding Histone H1/H5 - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) Linker histone N-terminal - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) - Biological Process: chromosome organization and biogenesis (sensu Eukaryota) (GO:0007001)	30
5	129393	Histone H5 - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) Winged helix repressor DNA-binding Histone H1/H5 - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) Linker histone N-terminal - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) - Biological Process: chromosome organization and biogenesis (sensu Eukaryota) (GO:0007001)	22

Preceding Unigenes (1)

Unigene	Build
SGN-U214029	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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