Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577991 in the current build, Tomato 200607 #2

Unigene SGN-U313529

Unigene Basic Information

Unigene ID:	SGN-U313529
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313529
mRNA sequence:	Length: 1509 bp

>SGN-U313529 Tomato 200607 #1 (78 members)
ATCGGCCGAATTGGCCCTTCTCCTCCTCACTACATTCTACTTCAATCAAAGATTTAGAGAAATGGAGACTTTCTTATTCACATCTGAATC
AGTCAACGAGGGACATCCCGACAAGCTCTGTGACCAGGTCTCTGATGCAGTGCTCGATGCCTGTCTAGCTCAGGACCCTGAAAGCAAAGT
TGCATGTGAGACTTGTACCAAGACCAACTTAGTTATGGTCTTTGGAGAGATCACCACCAAGGCCAATATTGATTATGAGAAGATTGTACG
TGACACTTGCCGGGAAATTGGATTTGTGTCCCCTGATGTTGGTTTGGATGCTGACAATTGCAGAGTCCTTGTGAACATTGAGCAGCAGAG
CCCTGATATTGCTCAAGGTGTTCATGGTCATTTGACTAAGCGACCTGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGC
CACTGACGAGACACCGGAGTTGATGCCCCTTAGCCATGTTCTTGCTACCAAACTTGGAGCTCGCCTTACTGAGGTCCGCAAGAATGGAAC
TTGCTCTTGGCTTAGACCTGATGGTAAAACACAAGTGACTGTTGAGTATCACAATGACAATGGTGCTATGGTTCCTCTACGTGTTCACAC
TGTTTTAATCTCCACTCAGCATGATGAGACTGTTACCAATGATGAAATTGCTCGTGATCTCAAAGAGCATGTCATCAAGCCTGTCATCCC
CGAGAAGTATCTTGATGAGAACACCATTTTCCACCTCAACCCTTCAGGCCGTTTTGTCATTGGTGGACCTCACGGTGATGCTGGTCTCAC
TGGCCGTAAGATCATCATTGACACTTACGGAGGTTGGGGTGCTCACGGAGGTGGTGCTTTCTCTGGGAAGGATCCTACCAAGGTCGACAG
AAGTGGAGCCTATATCGTGAGGCAAGCAGCTAAGAGCATTGTTGCTAACGGTCTTGCCAGAAGGTGCATTGTTCAGGTTTCATATGCCAT
CGGTGTGCCTGAGCCATTGTCCGTCTTTGTGGACACTTATGGAACTGGGAAGATCCCTGACAAGGAGATTCTCAACATTGTGAAGGAGAA
CTTTGATTTCAGGCCCGGAATGATTTCCATTAACCTCGATCTACTGAGGGGTGGCAATGGTCGATTCTTGAAGACTGCTGCCTATGGGCA
TTTTGGTAGAGATGATCCTGACTTCACATGGGAAGTAGTTAAGCCTCTCAAGTGGGACAAGCCTGAAGCTTAAACTGGAATATAAATGTT
TCATCCCTTATGTGACAAAGCTTACTATAGGCTGCATGTTGGCTTTTGTTTCGCCTTTTCTTTTGATTTTTTATTTCTTATATTTGTTCT
TTTTTTAATGTGGTTTTAGAAATATTGTTCTAAGTTTCTTGGATAAGATAAAGTTTGAGGAATATGATATCATGGATTGAGATATTAAAA
AAAAAAAAAAAAAAAAAAAAAAANNTTNGGGGGGGGGGGGGGGCCCCGTTCCCCTTTTCCCCGTTTGGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (25)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	9
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	4
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	9
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	10
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum lycopersicum	cTOS	suspension cultures	8026	12
Solanum lycopersicum	cTSD	seed	1504	1

mRNA member sequences (78)

Alignment image suppressed for unigene with 78 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101580	S-adenosylmethionine synthetase - Molecular Function: methionine adenosyltransferase activity (GO:0004478) - Molecular Function: ATP binding (GO:0005524) - Biological Process: one-carbon compound metabolism (GO:0006730)	69
2	118574	S-adenosylmethionine synthetase - Molecular Function: methionine adenosyltransferase activity (GO:0004478) - Molecular Function: ATP binding (GO:0005524) - Biological Process: one-carbon compound metabolism (GO:0006730)	50
5	129058	S-adenosylmethionine synthetase - Molecular Function: methionine adenosyltransferase activity (GO:0004478) - Molecular Function: ATP binding (GO:0005524) - Biological Process: one-carbon compound metabolism (GO:0006730)	50

Preceding Unigenes (1)

Unigene	Build
SGN-U213593	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: