Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U569783 in the current build, Tomato 200607 #2

Unigene SGN-U313451

Unigene Basic Information

Unigene ID:	SGN-U313451
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313451
mRNA sequence:	Length: 1573 bp

>SGN-U313451 Tomato 200607 #1 (62 members)
AGAGTGGAAATTGTTTTAGGTCGAAATAGAAAAAGGAGGTATTCGGAGAGCGAGACGAGATTCTTCATTTGCCTTCTCTGATCTCCGATC
TCCGATCTCCGATCTCCGATCTCCGATCTCAATCTGAATCTGTGTCAATGGAGAACTCCCGCCGTCAGTCTCTTCTTCCAAGCTTTCTCT
ACTCCCCAACATCTTCTTTTTCTTCTTTAACTCCCAAAACCCTTGCTGTTCCAGAAACCACCAGTGTTCCCAACAACAACCTCATTATTC
CGGCACCTAATGAACCTGGCAAGATCGAGATGTACTCCCCGCAGTTTTACGCTGCCTGTACCTTCGGTGGTATCCTCAGTTGTGGTCTCA
CTCACATGGCTGTCACTCCACTCGATCTCGTCAAATGTAACATGCAGATTGACCCTGCGAAATACAAGAGCATATCGTCTGGATTCGGCG
TCCTTCTTAAGGAGCAAGGTCCCAGGGGATTCTTCAGGGGATGGGTTCCTACCCTGTTAGGTTACAGTGCTCAGGGTGCATGCAAGTTTG
GATTCTATGAATTCTTCAAGAAGTACTACTCGGACCTCGCCGGAGCAGAAAATGCTGCAAAATACAAAACTCTGATATACCTTGCTGGTT
CTGCATCTGCTGAAGTGATTGCAGATATTGCTCTTTGCCCATTTGAAGCTGTAAAGGTTCGTGTTCAGACACAGCCTGGTTTCGCTAGGG
GATTGTCTGATGGATTGCCGAAATTTGTTAGATCTGAAGGTCCCATGGGCTTGTACAAAGGCTTGGTACCTCTTTGGGGACGTCAGATTC
CATATACAATGATGAAGTTTGCGTCCTTTGAGACTATTGTGGAGATGATCTACAAGCATGCAGTCCCAAAGCCTAAAAACGAGTGCAGCA
AATCTATGCAACTTGGTATTAGTTTTGCTGGTGGATATATAGCTGGTGTCTTCTGTGCCATTGTATCCCATCCTGCTGACAATCTTGTCT
CGTTCCTCAACAATGCGAAGGGTGCAACTGTTGGTGATGCCGTAAAGAAGATAGGAGTATTGGGCCTCTTTACCCGTGGTCTACCTCTAC
GTATTGTCATGATTGGAACTCTTACTGGTGCTCAATGGGGAATCTATGATGCTTTCAAGGTTTTTGTTGGGCTGCCAACAACTGGTGGTG
TTGCTCCTGCTGTACCTGCTGACTCTGAGGTTGCGAAGGTGTAGGATTGAGAAGAAATTAATTCTTCACCAAGTTTAAAAGTAGACTTCT
CCAGATTAAGCAATAAACATAGATTGCAGATGTTCCTTTAGTGCTCTTTCGTAGTAAGCAAGCTGGAGAGTGTTCTTTCGCTCAACAATC
TTTACAATTTTATATTTCTCTGATTTTCAAATTTTTGGAGAGGGGGAGTTCCCCTAAAACTTAAGCATTGCGGATGTCTTTTTTGTTAGA
ACAGATACAAAATCAATTTGATGCTAAGCTTTTCCCATTCGAGATGGGAATAACAAAGTAAAAAAAAAAAAAAAGTTTTGCTTTGTTCAT
TTTAACTGTCTGATGTACCCTTTAAAGGGCTAAAAAAGCTTTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	10
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	12

mRNA member sequences (62)

Alignment image suppressed for unigene with 62 aligned sequences.
[Show Image]

Markers Information (1)

Expression Data (3)

Annotations (manual: 3 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101398	Mitochondrial substrate carrier - Molecular Function: binding (GO:0005488) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	297
2	119488	Mitochondrial substrate carrier - Molecular Function: binding (GO:0005488) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	15
5	129908	Mitochondrial substrate carrier - Molecular Function: binding (GO:0005488) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	14

Preceding Unigenes (1)

Unigene	Build
SGN-U214237	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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