Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579858 in the current build, Tomato 200607 #2

Unigene SGN-U313437

Unigene Basic Information

Unigene ID:	SGN-U313437
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313437
mRNA sequence:	Length: 1835 bp

>SGN-U313437 Tomato 200607 #1 (11 members)
CAAAACGAAAAAAAAAAAAGTGTGTGTTCGCCGGCGCTTAATTCGAGGAGATTTAGAGCGAGAGAAAACGTTGTGTTCGCCGGCGTTTAT
TCCGATCTGTTCAGTTTAACAGAAGAAGAAAGTAAGTGTTTGTGTGTGTTTTTCCGGCGGTTATTTCGATTTTTTCAAGTTTAACACTGT
TTAGTAAATAATCGGACGGAGAGAAGAAATCGGAAATCGGAGAATGGCAGCTCAACCGAAGAATGTCGGAATTCTCGCCGTCGAGATTTA
CTTTCCTCCTACTTGCCTACAGCAGGAAGCATTGGAGGCTCATGATGGAGCAAGCAAAGGGAAATACACAATTGGTCTTGGACAAGATTG
TATGGGCTTTTGCACTGAGGTGGAAGATGTTATATCAATGAGTTTGACAGCAGTTACTTCCCTTTTGGAGAAGTATGCTATTGATCCAAA
GCAAATTGGTCGTCTAGAGGTTGGAAGTGAAACCGTAATTGATAAGAGCAAATCCATCAAGACATTCCTGATGCAAATATTTGAGAAATC
TGGAAATACTGACATTGAAGGAGTCGACTCAACTAATGCATGCTATGGGGGAACTGCCGCATTGTTCAACTGTGTGAATTGGGTCGAAAG
CTCTTCATGGGATGGTCGCTACGGACTCGTTGTGTGCACTGATAGTGCGGTCTATGCTGAGGGAGCTGCTCGGCCTACTGGAGGTGCAGC
AGCAATTGCTATGCTAGTCGGGCCAGATGCTCCTATTGTGTTCGAAAGCAAGATTAGGGCTAGCCATATGGCCCATGTCTATGATTTTTA
CAAGCCCATACTCGACAGTGAATATCCAGTGGTTGATGGCAAACTTTCACAAACTTGTTATCTTATGGCACTTGACTCTTGCTACAAGAG
CTTATGCAACAAATACGAAAAATTGGAGGGCAAGCAGTTTTCAATTGATGATGCAGCCTATTTTGTTTTCCATTCACCATACAACAAGCT
TGTACAGAAGAGCACTGCTCGGTTGATGTTCAATGACTTTACAAGGAACGCTAGTTCCATTGATGAGTCTACTAAAGAAAAGTTGGCACC
ATTTTCATCCCTAACTGGTGATGAGAGTTATCAAAGCCGTGATCTTGAGAAGACATCCTGGCAAGTAGCAAAACCATTTTATGACGAGAA
GGTAAAACCGGCCACATTAATACCAAAACAAGTTGGCAACATGTACACCGCGTCTCTCTATGCTGCTTTTGCATCCCTCCTTCACAATAA
GCACAGCTCATTGGCTGGACAGAGGGTAGTATTGTTCTCTTACGGGAGTGGATTGACTGCAACAATGTTCTCATTAAAGCTTCACGAAGG
TCAACATCCTTTTAACTTGTCAAACATCGCAACTGTGATGAACATTGAAGAGAAACTGAAGTCGAGGCATGAGTTCACTCCTGAAAATTT
CATCGAAACTATGAAGATAATGGAGCACAGGTACGGGGGTAAGGACTTTGTGACGAGCAAGGATTGCAGCCTTCTAGCTCCTGGTACGTA
CTATCTAACAGAAGTCGATTCGAAGTACAGAAGATTCTATGCAAAGAAATGTGCTGAGAATGGACTTGCCAATGGTCATTGAATATAAGT
CCTAGTATGATATAACTTCCATGAATTTTGCTTGTACTCTTTTAATTATATAATTGCTTCATAATAACATATAGTTTCTTTTTACTTCCC
AACAAATTCAATATTTGTTTCTTGTATTCTCCACCAATGGGTAGTCTTATATATGAATTGAGAAAAACTATATTTTGGGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
hmgs	3-hydroxy-3-methylglutaryl coenzyme A synthase

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (11)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102217	Hydroxymethylglutaryl-coenzyme A synthase C terminal Hydroxymethylglutaryl-coenzyme A synthase N-terminal Hydroxymethylglutaryl-CoA synthase - Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421) - Biological Process: acetyl-CoA metabolism (GO:0006084) Hydroxymethylglutaryl-coenzyme A synthase active site - Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421) - Biological Process: acetyl-CoA metabolism (GO:0006084)	19
2	119206	Hydroxymethylglutaryl-coenzyme A synthase active site - Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421) - Biological Process: acetyl-CoA metabolism (GO:0006084) Hydroxymethylglutaryl-coenzyme A synthase N-terminal Hydroxymethylglutaryl-CoA synthase - Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421) - Biological Process: acetyl-CoA metabolism (GO:0006084) Hydroxymethylglutaryl-coenzyme A synthase C terminal	19
5	129619	Hydroxymethylglutaryl-coenzyme A synthase active site - Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421) - Biological Process: acetyl-CoA metabolism (GO:0006084) Hydroxymethylglutaryl-coenzyme A synthase N-terminal Hydroxymethylglutaryl-CoA synthase - Molecular Function: hydroxymethylglutaryl-CoA synthase activity (GO:0004421) - Biological Process: acetyl-CoA metabolism (GO:0006084) Hydroxymethylglutaryl-coenzyme A synthase C terminal	18

Preceding Unigenes (4)

Unigene	Build
SGN-U213560	Lycopersicon Combined #3
SGN-U213561	Lycopersicon Combined #3
SGN-U232532	Lycopersicon Combined #3
SGN-U232533	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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