Sol Genomics Network

Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581624 in the current build, Tomato 200607 #2

Unigene SGN-U313368

Unigene Basic Information

Unigene ID:	SGN-U313368
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313368
mRNA sequence:	Length: 2703 bp

>SGN-U313368 Tomato 200607 #1 (23 members)
TTTTCCTCTCTCTTTCTCATTCTTGTTTTCTCATTTTTCCTCTTTATTTTTTCTTCACAAACCCACCATTTCTTTCTAATCTCATCTTGT
TTTCTTCATTGTCCCCTCTCTTTAGTCCACCAGGTGGTGACTTTAGATCTGTTGCTTCATCTGCTGATGTTTTGGAGGTCTGCTTAGCGG
TGAAGTTTGAGACACTGCTGTCACTACAATACTATCTTTGTCTTTTGGAGATTGTGAATATAGAGTTATAGGCCTAATGCAAGGGCAACG
GAGTGCAATCGGATCCCTGCCAGAAACTTTGGGTTTTACTCATGGTTCAACATCGAGTGATGGTGGTATAGATCAGCAGATATGTTGGAA
TAATTTGCGAAATCCTGCACAAAATCGGCTACCAGATTATATGGTACCTTCTAATGAGACAACCATACCATTTCTTAGTCATGCAAACCA
AGAAAGGCAGAGTGTAATTGGATGGAATTTAGGAGAATCCAGCTCCTCCAATACACAAAATAGTGTTAGTCGTAGTGAAAATACTACAAT
GAGTGCCCGTCCTGGGCCTTCTCACTTCTCTGCTGAACAGCATTATGGGTCTTCCAATATTCTTTCATTGGGTGATGTTGAAATAAATTT
GAATAACCAGTTAGCTAACAACACTTTATTTTCTCAAGCTTCTACTTCTAGCACTGTTCCAAATGAACTAAGTAGAAGTGCTGGACATGA
GGGGCGTGATGGCGATGAAGATGATGATGATGACTGCGAAGTGATGGAGTGCACCCCAACATTCAAGTCTAATGGACCAGGAAAAGAACG
GATGTCAACCGCCAGTACTTCTTCTGCTCCCCTTGCTGGGACTTCTGCAACTAATGGGTTTCTGAGGGATGAAAGTGATGGCAGACCAGG
CTGTACACTGGATGGTCGACGCATGGCTTGTAAGAGAAAAGCAGTTGAAGGACATCTGGGACAATCTTCGGGAAGTGGAAGTCCAGATTA
TCTTCTAAACAGCTTATGGCGTTCTATACCTGCTCCAAATAATCTGACTGCTGGTGCTAATAGCTCTGCACCAACAGAAAGTAGAAGAAA
CATCAATTTGCCAGCGCAGATAAATCCAAGACTTGGGCTCACTATGGGTGGCACCACTATGGAAGGTCCGATTGCATTGCCTGCTTCAAG
GAGAGCAGAAAGTTACCGTAGAAATTTCAGGCTTAGGATCAATGGCTCTCATCAGCAAGTTCCTATTCCTGGCAATACGTTTCCTACTGT
GGGTAATGATAGAAATGTTACCATGTCTGACTGGGACGCATTGAGGCTGCCTTCTAATCAGTCTTTGGATTCGAGGTCTGTTTCTGCTGC
AGATAATGTAAGTCCCCGAAGCCAGCCAGTTGTGGGGCCGGTTCCTTCTCTGCGACGAAATGCACAGAGGTGGGATTCATCTAGTTCAAG
AGCTGGCAGTCCATCAAGTTATTCTGTTTTTCTTGAGAGGAATTCTGCAGCCTATGAACAACCAAGCTCAAGAAGTGTGCCCAGAAACAT
TTCGCAGCATCCAATGTTCATACCCGCTAGTGACTTGAGAAATTTGAATCAAAATCCTGTCAACTGGGGTTTAGCTGGTGGAAATATTTC
CATTGCTGGAAATGTTGCATCTTCTTCTCGGAGTGGTCCTAGCTCAGTAGCCCCTTCCTCTTCTCCTGGTTGGGTGGAACAAAGAAATCC
TCAGCAATATCCTCGACGACTCTCAGAATATGTTCGTAGATCTATGTTGTCTTCAGCTGTCAGTGAACCTGGAAGTCACAATGGTAACAC
TCCGCCACATTTGAGTTCTGCTACCTCACAGGAGATGGGGCTTTCTGGCCATCCCGGGCATCGTCCATCAAGTTCAAGGTCAGCATTGTT
GTTGGAGAGACAACTCGATGGTGCAATGGGAGTTCCATATTCCTGGAGGACTTTGGCTGCTGCCGGTGAAGGAAGAGGCAGGCTAGTTTC
CGAGCAGATTCGCAATGTGTTGGATCTAATGCGCAGGGGAGAGAGCTTAAGATTTGAGGACGTTATGATCCTCGATCAGTCAGGGTTCTT
TGGGATGGTGGATATTCAGGATCGCCATCGTGATATGCGTCTTGATGTTGATAACATGTCCTATGAGGAACTACTGGCGCTTGAGGAGCG
CATAGGGAATGTCTGCACCGGGCTAACTGAAGAAACCATTTTGAATCGTCTGAAGCAACGGAAACATGTTAGCATTAGAACAGAAGAAAC
CAATGATGCTGAGCCATGCTGTATTTGTCAGGAAGAATACAAGGATGGTGAGGATCTTGGGAAGCTGGATTGTGGCCATGATTTTCATGC
CGACTGCGTTAAACAATGGCTCATGCAGAAGAATTTGTGCCCAATTTGCAAAACAACAGGACTCAATACTTCAGGAAAACATTGATCCAT
GGAAGTTTGATGTACCAGTTGGACCATGGAAGGTTGACACAAAGCGTGTCTACGCGTTTGGTCCATGAGTTCATTCTGAGTGAGAAAGAT
CTATGTATTTTTCTCATTAATTTTATTCTGACCTCTGCTTAGAGGGAGTTATTTTAGAGATAGAAGAAGCACTAGCTACAATTAGGGTCA
TTAGGCAAGAGTTATACATTATTTGGTTGTTTGGAAATTTACATTCTTACTTTCCAATTTATTGATACCTTTGAATATTTTAAAAAAAAA
AAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (23)

Alignment image suppressed for unigene with 23 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 0 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101372	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	566
2	118581	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	49
5	129527	Zinc finger RING-type - Molecular Function: protein binding (GO:0005515) - Molecular Function: zinc ion binding (GO:0008270)	19

Preceding Unigenes (2)

Unigene	Build
SGN-U216854	Lycopersicon Combined #3
SGN-U221889	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: