Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U581290 and SGN-U590842 in the current build, Tomato 200607 #2

Unigene SGN-U313307

Unigene Basic Information

Unigene ID:	SGN-U313307
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313307
mRNA sequence:	Length: 2056 bp

>SGN-U313307 Tomato 200607 #1 (58 members)
TTTACCTAATCGGTCTATACAAGAGGGTTGAGGCTCGTCATCTCCGTCACACACCATCTTTGTCCCTCATTTTCACCAACCACACACACT
CTCTCTCTCTATCTCTATTGCAGTTCAACTCGCCGTACCGGAGAACTGAAATCGGCAACTATGGCAGCTACATTTGCTTCAGTGTCGAAT
TTAGGCTCAATTTCAGTTCCACGAGTTGCGAACCCTACATATGCTGCTTATCCGAAGTTGCTGAAATCTTCATTCTCATCGTCAAGCTTA
TTTGGTGGTTCGTTGCGTCTGGACACTTCTTCAAACCGTTCGGTTCACAAAAAAACCGGCGGTTCATCTGGTTCTATTCAAGCCGCGGTG
GAGGTGGCGGATTTGCAATCCAAAGTGACAAACAAAGTTTATTTTGATATTAGCATTGGGAATCCTGTTGGAAAACTTGCTGGGCGAATT
GTAATTGGATTATATGGTGATGATGTGCCACAGACAGCTGAAAATTTCCGTGCACTCTGCACAGGTGAGAAGGGCTTTGGCTTCAAGGAT
TCTGCATTTCACCGTGTTATTAAAGATTTCATGATTCAAGGGGGTGATTTCGACAAGGGAAATGGAACCGGTGGTAAAAGCATATATGGT
CGTACCTTCAAGGATGAAAACTTCAAGTTGGTTCATACCGGACCTGGGATTGTTAGCATGGCTAATGCAGGGCCTAATACCAACGGAAGC
CAATTCTTCATTTGCACTGTAAAGACCCCATGGCTGGATCAAAAGCATGTTGTGTTTGGGCAAGTTTTAGAAGGCATGGACATTGTGAAG
TTGATCGAGTCCCAGGAGACTGATAGGGGTGACCGTCCAAGGAAGAGGGTTGTCATCAGTGACTGTGGTGAGCTACCTATAGTTTGAGGC
GAGAATATAACTGTTTAGCACTTCATCTTTGCACACAATGGATATATGGACCGTTGTGAGATATAGAGCATATTCAGTAGTGAGTTTTCA
TCCAAATCCCAGGCTTTTTTTCTTCTTCTTTTTCTGGGTTTGTTGGATTTCAAATTACAGGGTAAAAAGTTCTTGCTAGAAGCGACTACG
ATGTTTTCCTGTTAACGTGGATGTATGCAATTTCAGTTAACATTGAATATTGATGGGATGGTAAGAGACTATTGTTGCTTTTAAAAAAAA
AAAAAAAAAAAGCCTGGGATTTGGATGAAAACTCACTACTGAATATGCTCTATATCTCACAACGGTCCATATATCCATTGTGTGCAAAGA
TGAAGTGCTAAACAGTTATATTCTCGCCTCAAACTATAGGTAGCTCACCACAGTCACTGATGACAACCCTCTTCCTTGGACGGTCACCCC
TATCAGTCTCCTGGGACTCGATCAACTTCACAATGTCCATGCCTTCTAAAACTTGCCCAAACACAACATGCTTTTGATCCAGCCATGGGG
TCTTTACAGTGCAAATGAAGAATTGGCTTCCGTTGGTATTAGGCCCTGCATTAGCCATGCTAACAATCCCAGGTCCGGTATGAACCAACT
TGAAGTTTTCATCCTTGAAGGTACGACCATATATGCTTTTACCACCGGTTCCATTTCCCTTGTCGAAATCACCCCCTTGAATCATGAAAT
CTTTAATAACACGGTGAAATGCAGAATCCTTGAAGCCAAAGCCCTTCTCACCTGTGCAGAGTGCACGGAAATTTTCAGCTGTCTGTGGCA
CATCATCACCATATAATCCAATTACAATTCGCCCAGCAAGTTTTCCAACAGGATTCCCAATGCTAATATCAAAATAAACTTTGTTTGTCA
CTTTGGATTGCAAATCCGCCACCTCCACCGCGGCTTGAATAGAACCAGATGAACCGCCGGTTTTTTTGTGAACCGAACGGTTTGAAGAAG
TGTCCAGACGCAACGAACCACCAAATAAGCTTGACGATGAGTCTTCATGTTTCGTCAACATTGGATGACAACTTTGGATACTGGACGCAA
CTCGTGGAACTGAAATTGAGCCTAAATTCGACACTGAAGCAAATGTAGCTGCCATAGTTGCCGATTTCAGTTCTCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	5
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	6
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	7
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTSB	seed	1880	2
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	cTSD	seed	1504	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (58)

Alignment image suppressed for unigene with 58 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 3 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101457	Peptidyl-prolyl cis-trans isomerase cyclophilin type - Biological Process: protein folding (GO:0006457)	137
2	118499	Peptidyl-prolyl cis-trans isomerase cyclophilin type - Biological Process: protein folding (GO:0006457)	78
5	129008	Peptidyl-prolyl cis-trans isomerase cyclophilin type - Biological Process: protein folding (GO:0006457)	68

Preceding Unigenes (1)

Unigene	Build
SGN-U213452	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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