Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579555 and SGN-U590601 in the current build, Tomato 200607 #2

Unigene SGN-U313262

Unigene Basic Information

Unigene ID:	SGN-U313262
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313262
mRNA sequence:	Length: 2092 bp

>SGN-U313262 Tomato 200607 #1 (95 members)
GCCGAATTAGGACAACAAAAAAAGAGAGTGAGGCTGAGAGAGATATACTCATCAATATTTTTCTCACACCTGCACACACCACACACTTAA
AAATTAAAAATATTTCAAAATATTTCTTTTGATTTTCTTTTTTTCTTCTTCTTCTTCTTCCCCATTTCTGTAATCATCCCGCTTCTTTGA
TCCCTTTCTGTAAACTATCTGTGTTTTTTCAAGAAGTTTTTCTGACTTTTGAGTTTGTGATTTTCATGTTTTTGAACTTAAAAATGGAGA
AAATGCAAACTTTTAATTAGAGGAAAAAGATTTTTTTTACAAACTCAGGTGTTTTCAGAATCGAGATCTAGTAAAGTATAACTCAGTATA
GTTCCTTTTTTTTTCTTTTTATGCATAATCAGATTAGAGGGCTTTATTAGTTGTCCCCTATAGTTTGATTTGTTTTTAAAGGAGAAAAAT
AGAGGTTGTTATTTGAAGACCTCTGTTTTTTTTTCTTCTGTTTATAGTGAAATCACTTACCTGTGTTCTTTTTATTTGATAAGAAACAGG
TTGTGTGAATTTTTATTTTTTTTTCGTTGTTTAGATATGGCAGCTATGGATTTTTGGAATAGTACATGTGTAGATTTTGAATTATCATCA
GAACCTGTTACTTCTGGTGGTGAATTAATGGAAGCTCTTGAACCTTTTATGAAAAGTGCTTCTTCTTCTCCTTCTCCTCCACCTTCTACT
TTTCCTCCTGTTTTCCCTTCTTCTTCTTCTTCAACTTTTCCTTCTTCAGATTTTCAATCTTTTCCTTCATTTCCTCCTCCAACTCCTCCC
ATTTCATATCCCTACACTTCTTCTTTTTACCCATCTACTATGAGCTCTGAGGTTTGTTCCACTTCCACAGAGATGAATTCCCAAATCTTT
TCAACTGGGTTTTCTGGGTATGGAATGGAGCAACAGGGTTCAATTGGGCTGAATCAGTTAACCCCAATTCAGATCCAGCAAATTCAAGCT
CAAATCAACTTTCAAAACCAACAACAACAGCAGCAGCAGCAGATGATGTTACAGACTGCCCATCATGCTTCCACCATGAATTTCTTGGCT
CCAAAGCCGGTTCCAATGAAGCAATCTGGGTCGCCACCAAAACCCACGAAGCTCTACAGAGGTGTTAGACAACGCCACTGGGGTAAGTGG
GTCGCTGAGATCCGTTTGCCTAAGAACCGAACCCGCCTTTGGCTTGGTACATTTGACACCGCTGAAGAAGCTGCTCTGGCTTACGACAAG
GCGGCGTATATGCTTCGTGGCGACTTTGCTCGACTGAACTTCCCTCAACTCCGCCACAACGGCAACCTAATCGGCGGCGACTTTGGTGAA
TACAATCCATTGCATTCCTCAGTTGATGCTAAGCTAAAGGACATATGCCAAAGCTTGGCACAGGGGAAGAGCATTGACTCTAAGAAGAAG
AAAACCAAAGGGTTGTCGGCGGAGAAAGCGGCGGTGGTGAAGATGGAGGAAGAGGAGAGCAAAACAGCAGAAGTTGGATCCGAAAGTGAC
GGGTCCCATTCCGGTTCCGGTGGATCATCGCCGGTGACCGAACTGATATTCCCGGAGTTCACTGAGGAAGAGCCAACTTGGGACATGTCA
GAAAATTTTTTGTTGCAGAAGTATCCATCTCATGAAATTGATTGGGCCTCTCTATAAAATTAGAAAATAATTAAGAAAAAAATTAGTAGT
AATTATCAAATTAAGTCTAGGTTTAATGAGGTCTTATGTATTTTTTTTTTTTTTGTATTTTTGCATTGTTTATAATTGTTAATGGTGGTT
CTAGGTCACTAGGTCCATGGAACATTGAGTCACTGCAATGGAGTTTTTGGCAATTGCAGGGCAAGTTCCTTTGTAGTTTTTTTCTTCTTC
ATATTTTAGGTTTATAAAAATCCAAATTGGTTAAGCTAATGTTTTTAAAAAAAGCTAGGCCAGTGGATTTTTGTTGCAATGTAATGTCAT
GGTTGTAATCTTTATTTAGTGTCAATATTTCATTAGTATTAATTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAANAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
dreb3	dehydration-responsive element binding protein 3

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	16
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	33
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	9
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	8
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (95)

Alignment image suppressed for unigene with 95 aligned sequences.
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Markers Information (0)

Expression Data (12)

Annotations (manual: 3 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101383	Pathogenesis-related transcriptional factor and ERF - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355)	404
2	118417	Pathogenesis-related transcriptional factor and ERF - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355)	283
5	129442	Pathogenesis-related transcriptional factor and ERF - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355)	21

Preceding Unigenes (1)

Unigene	Build
SGN-U213279	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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