Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580583 in the current build, Tomato 200607 #2

Unigene SGN-U313176

Unigene Basic Information

Unigene ID:	SGN-U313176
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313176
mRNA sequence:	Length: 1892 bp

>SGN-U313176 Tomato 200607 #1 (97 members)
GAAAAATCCCATTTCCAACCTCTTGTATTGCAATAATATAATATAATACATCCCTCTCACCACTCTCAGCGGCATTCGTTCATTCATTTC
CACTAACACAAAAGAGAAAGAAAGAGATAATGGCATCAGCTACTGCTTCCCACACTTTGTGCGGCATTCCCACCACATCATCATCCTCTA
CCACCAACAAGTCTACCACCTATTCCTCTGCTCGCTTCCTCCTTAAAACTCCTCTCCGCCGCCTCGGTTTCGCCGGAACTGTCGCTGATC
CTCTCTTCACCAACCACGTCGCGACCAAGCTCCGATCTGTCAAGGCCTCCTCCAACCCTGTTAGGGCCGTTGTCTCCATGGCCAAGAAGA
GCGTTGGAGACCTTAGCTCTTCCGATTTGAAGGGCAAGAAAGTCTTCGTCAGGGCTGATTTGAATGTCCCACTTGATGATTCACAGAACA
TTACTGATGACACTAGGATTAGAGCTGCCATCCCTACCATCAAACACTTGATTGCCAATGGGGCTAAAGTTATTCTCTCCAGTCACTTGG
GAAGGCCAAAGGGAGTCACTCCTAAATACAGCTTAGCACCCCTTGTCCCCAGGCTATCTGAACTACTTGGAATCCAGGTTGTAAAGGCTG
ATGATTGCATTGGTCCAGAAGTTGACAAGTTGGTTGATTCACTTCCAGAGGGCGGTGTTCTTCTTCTTGAGAATGTAAGATTCTACAAAG
AGGAAGAGAAGAATGAACCTGAGTTTGCAAAGAAACTTGCATCATTGGCAGATCTTTATGTGAATGATGCCTTTGGTACAGCTCATAGAG
CACATGCCTCTACAGAGGGAGTTACTAAATTTTTGAAGCCTTCTGTTGCTGGTTTCCTTTTACAAAAGGAATTGGACTATTTAGTTGGTG
CAGTTTCAACTCCAAAGAGGCCATTTGCTGCTATTGTGGGTGGTTCAAAGGTTTCATCCAAGATTGGAGTGATTGAATCACTTCTGGAGA
AATGTGATATATTGCTTTTGGGTGGAGGAATGATCTTTACCTTCTACAAGGCTCAGGGTCTTTCAGTTGGTTCCTCCTTGGTTGAGGAAG
ACAAACTAGAGCTTGCAACATCACTCCTGGAAAAGGCCAAGGCAAAAGGAGTCAGTCTCTTGTTACCATCTGATGTTGTGATTGCAGATA
AATTTGCTCCTGATGCAAACAGCAAGATTGTGCCGGCATCTGCTATCCCAGATGGTTGGATGGGGTTAGACATTGGACCAGACTCTATCA
AGACTTTCAACGATGCTTTGGATACCACAAAAACAGTGATCTGGAATGGACCTATGGGGGTGTTTGAATTTGACAAGTTTGCTACTGGAA
CGGAGGCAATTGCAAAGAAGCTAGCAGACCTAAGTGGGAAAGGAGTGACCACTATCATTGGAGGTGGAGACTCTGTTGCAGCGGTTGAGA
AAGTTGGAGTGGCTAGCGTGATGAGCCATATATCCACTGGTGGTGGTGCCAGTTTGGAGTTACTTGAAGGAAAGGTGCTCCCTGGTGTCA
TAGCTCTAGATGAGGCTGACGCCCCTGTTGCAGTGTAAAACAATTTGTACTAAATTCTTTTTTCGGTCAACTTAACTTAATCAGCCAGTT
GGGGAACATTGAGTTGTTAATGTTGTAGATTTTCCAGGTGATATAAGGGCCTTTTTTCCCAAGCTATTTTATCTGTCTAAATAAAGGGCG
TGTGTGTATGTATAGACAGCGACAACTTTGGTTCAACTTGTTTAGATGTAACAAGTGCACTTGACACCTCCTGCTCAAAAAAAAAAATGT
GCACTTGGACATGAATTTTGATGAAAAGAAAAATTAAAAACAAGCATACACTGCAGTTTTAACTTGCCTATGATAAAAAAAAAAAAAAAA
AA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (25)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	13
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	13
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	11
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	7
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	7
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	5
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (97)

Alignment image suppressed for unigene with 97 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 2 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101399	Ubiquitin - Biological Process: protein modification (GO:0006464)	297
2	118999	Phosphoglycerate kinase - Molecular Function: phosphoglycerate kinase activity (GO:0004618) - Biological Process: glycolysis (GO:0006096)	23
5	129406	Phosphoglycerate kinase - Molecular Function: phosphoglycerate kinase activity (GO:0004618) - Biological Process: glycolysis (GO:0006096)	22

Preceding Unigenes (1)

Unigene	Build
SGN-U213526	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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