Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577772 and SGN-U591570 in the current build, Tomato 200607 #2

Unigene SGN-U313139

Unigene Basic Information

Unigene ID:	SGN-U313139
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313139
mRNA sequence:	Length: 1552 bp

>SGN-U313139 Tomato 200607 #1 (23 members)
TGAACCAAAAAGGAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCAT
GGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTT
CTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAG
GTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAGGAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGT
GGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCATTTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGA
CTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAGATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACT
AGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAA
GATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGA
TGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAGTCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATG
GCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGT
AGTACACTGCAGTGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGC
TCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATGGATCAATACCTTTTCTGCTATGATGC
CATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTGTAGCGATGAGTTAACAAGATCTTGGATTCT
TGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTG
GGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATG
CCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGT
TTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGTG
AAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	9
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2

mRNA member sequences (23)

Alignment image suppressed for unigene with 23 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 3 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102507	Tyrosine specific protein phosphatase and dual specificity protein phosphatase - Molecular Function: phosphoprotein phosphatase activity (GO:0004721) - Biological Process: protein amino acid dephosphorylation (GO:0006470) Protein tyrosine phosphatase catalytic region - Molecular Function: protein tyrosine phosphatase activity (GO:0004725) Tyrosine specific protein phosphatase - Molecular Function: protein tyrosine phosphatase activity (GO:0004725) - Biological Process: protein amino acid dephosphorylation (GO:0006470)	13
2	119809	Protein tyrosine phosphatase catalytic region - Molecular Function: protein tyrosine phosphatase activity (GO:0004725) Tyrosine specific protein phosphatase - Molecular Function: protein tyrosine phosphatase activity (GO:0004725) - Biological Process: protein amino acid dephosphorylation (GO:0006470) Tyrosine specific protein phosphatase and dual specificity protein phosphatase - Molecular Function: phosphoprotein phosphatase activity (GO:0004721) - Biological Process: protein amino acid dephosphorylation (GO:0006470)	12
5	130130	Protein tyrosine phosphatase catalytic region - Molecular Function: protein tyrosine phosphatase activity (GO:0004725) Tyrosine specific protein phosphatase - Molecular Function: protein tyrosine phosphatase activity (GO:0004725) - Biological Process: protein amino acid dephosphorylation (GO:0006470) Tyrosine specific protein phosphatase and dual specificity protein phosphatase - Molecular Function: phosphoprotein phosphatase activity (GO:0004721) - Biological Process: protein amino acid dephosphorylation (GO:0006470)	12

Preceding Unigenes (1)

Unigene	Build
SGN-U212681	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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