Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577784 and SGN-U593754 in the current build, Tomato 200607 #2

Unigene SGN-U313127

Unigene Basic Information

Unigene ID:	SGN-U313127
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313127
mRNA sequence:	Length: 1578 bp

>SGN-U313127 Tomato 200607 #1 (111 members)
GCACGAGCTTTGCTTCTCTGAGCCTCTTTTACTTATTATTACTGCATTTCATGCTTTCTCTGAGCCTCTTTTACTTATTATTACTGCATT
TCAGGAATAAGGCGAATTTGTGAAGGGGGAGAAAATGGACTATGTTAATGGACCTGGAAGGAACCATTTGTTTGTTCCGGGACCTGTTAA
TATCCCGGAACAAGTTCTACGTGCTATGAACCGAAACAACGAAGATTACAGGTCCCCAGCTGTTCCAGCTCTCACAAAGACCTTGCTTGA
GGATGTGAAGAAGATTTTCAAGACTACTAGTGGAACTCCATTTCTGTTCCCAACTACAGGAACTGGTGCATGGGAAAGTGCACTCACGAA
CACGTTGTCTCCTGGTGATAGAACTGTATCGTTCCTCATCGGTCAGTTCAGTCTGCTTTGGATTGATCAACAGAAACGTCTCAACTTTGA
CGTTGATGTTGTTGAGAGTGATTGGGGCCAAGGTGCAAATCTTGAGGTTTTGGCCTCGAAAATTGCAGAAGATAAGTCTCATACCATCAA
GGCGGTTTGCATTGTGCATAACGAGACAGCCACTGGAGTTACCAACAACTTGGCTACTGTAAGGAAAATACTCGATCACTACCAGCATCC
TGCCCTCTTCCTTGTTGATGGAGTGTCCTCAATTTGTGCACTTGATTTCCGTATGGACGAATGGGGTGTAGATGTGGCACTTACTGGTTC
CCAAAAAGCACTTTCCCTTCCCACGGGGCTCGGGATAGTCTGTGCTAGCCCCAAGGCTCTTGAGGCCAGCAAAACTGCAAAATCAGTGAG
AGTTTTCTTTGACTGGAGTGATTACCTTAAGTTCTACAAGCTGGGAACTTATTGGCCGTATACTCCTTCCATCCAACTTTTGTATGGTCT
GAGAGCAGCTCTCGACCTTCTTTTCGAGGAAGGCCTTGATAATGTGATTGCAAGACACGCTCGCCTTGGCAAAGCAACAAGACTTGCTGT
GGAGGCATGGGGCTTGAAGAACTGCACTCAGAAGGAGGAATGGTTCAGTGATACAGTCACAGCCGTTGTTGTTCCTCCACACATTGAAAG
TTCTGAAATCGTGAAAAGGGCATGGAAGCGATACAACTTAAGCTTAGGTCTCGGCCTAAACAAAGTTGCAGGAAAAGTTTTCAGAATAGG
ACATCTTGGAAACTTGAATGAGTTGCAACTATTGGGATGTCTTGCTGGAGTTGAAATGGTACTTAAGGATATTGGTTATCCAGTGAAGTT
TGGTAGTGGAGTTGCAGCTGCTAGTGCTTTTCTGCAAAATTCAACTCCACTTATTCCATCAAGAATTTAATTCAATTATTATTACTGAAA
GTATACAAAACCAATGCATGTAAATTATTCTCTTCATGTAACTTATGTTTCAATGTTCAAATACTGGTTGAGAATACTTTTGTAAAATTG
CAAAATTTCCTTCTTCCCATGATAACTATATGTGTTTTCTTTCTTCTAAGTTCTTTTCCGAAAGTCGATGACTAGTCATGATTATGATAA
TTTACATTGACATCAAAAAAGAGTTTGATCCAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	27
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	11
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	9
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	8
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	14
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	6
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	5
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (111)

Alignment image suppressed for unigene with 111 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	103068	Aminotransferase class V - Biological Process: metabolism (GO:0008152) - Molecular Function: transaminase activity (GO:0008483)	8
2	120660	Aminotransferase class V - Biological Process: metabolism (GO:0008152) - Molecular Function: transaminase activity (GO:0008483)	8
5	131284	Aminotransferase class V - Biological Process: metabolism (GO:0008152) - Molecular Function: transaminase activity (GO:0008483)	7

Preceding Unigenes (2)

Unigene	Build
SGN-U213530	Lycopersicon Combined #3
SGN-U228285	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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