Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579510, SGN-U589902, SGN-U591541, and SGN-U592480 in the current build, Tomato 200607 #2

Unigene SGN-U313082

Unigene Basic Information

Unigene ID:	SGN-U313082
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313082
mRNA sequence:	Length: 1762 bp

>SGN-U313082 Tomato 200607 #1 (288 members)
TTGGCAACCAATCATAACTACGGTTAAGTTTAAACTAACCGTGGTTCTCAACCGCAAGATTTTATTTCTTGGGAGTTGTTCACGGTATAA
AAAGGGCTTCTCAGCACAGAGAACGTATCAGATCTGAAAATCTTCGGAAGAGGCGTCTTGATAAACGTCCTTTCGTTTTGAATTTGAAAT
TTGAAGATTTCTAAATAAAAAAAGCAGCGAAAATGAGAGAATGCATATCGATCCACATTGGTCAGGCCGGTATTCAGGTCGGAAATGCAT
GCTGGGAACTTTACTGCCTTGAGCATGGCATTCAGCCTGATGGCCAGATGCCAGGCGACAAGACAGTTGGAGGAGGTGATGATGCCTTCA
ACACCTTCTTCAGTGAAACTGGAGCTGGAAAGCATGTTCCCCGTGCTGTCTTTGTGGATCTTGAGCCTACTGTCATTGACGAAGTCAGGA
CAGGAACATACAGGCAGCTCTTTCACCCTGAGCAGCTCATCAGTGGCAAAGAAGATGCAGCCAACAACTTTGCCCGTGGACATTATACAA
TTGGGAAGGAGATAGTTGATCTCTGCTTGGATCGTATCAGGAAGCTTGCTGATAACTGTACTGGTCTTCAAGGTTTCCTGGTTTTCAATG
CTGTAGGTGGTGGAACTGGTTCTGGTCTTGGGTCACTTCTGCTGGAGCGTCTCTCTGTGGACTATGGAAAGAAATCAAAACTTGGTTTCA
CCATTTATCCATCACCACAGGTCTCAACCTCTGTGGTGGAACCTTACAACAGTGTCCTGTCAACCCACTCCCTTCTTGAGCACACTGATG
TTGCAATTCTTCTTGACAATGAGGCTATCTATGACATCTGCAGGCGCTCATTGGACATTGAGCGTCCCACATACACCAATCTTAACCGTC
TTATTTCACAGGTTATCTCTTCACTTACTGCTTCTTTGAGGTTTGATGGAGCCCTGAATGTTGATGTCAATGAATTCCAGACCAACCTTG
TTCCCTACCCCAGAATTCATTTTATGCTTTCATCCTATGCTCCTGTCATTTCAGCTGAGAAAGCCTACCATGAGCAGCTGTCAGTTGCAG
AGATCACCAACAGTGCTTTTGAGCCATCTTCCATGATGGTCAAGTGTGATCCTCGCCACGGCAAGTATATGGCTTGCTGCCTTATGTTCC
GTGGTGATGTTGTGCCAAAGGATGTGAATGCTGCTGTGGCTACCATCAAGACTAAGCGCACCATCCAATTTGTTGACTGGTGCCCTACTG
GATTCAAGTGTGGTATCAACTATCAGCCACCAACTGTTGTTCCTGGAGGTGATCTTGCCAAGGTGCAAAGGGCTGTATGTATGATTTCCA
ACTCAACCAGTGTTGCTGAGGTCTTCTCACGCATTGACCACAAGTTCGATCTCATGTATGCAAAGCGTGCTTTTGTCCACTGGTATGTTG
GTGAGGGTATGGAAGAAGGCGAGTTCAGTGAAGCACGTGAAGATTTAGCTGCTTTGGAGAAGGATTACGAGGAGGTTGGTGCTGAATTGG
AAGAAGGAGAGGATGATGATCACGAGGAGTACTAAACACGGGATGGCTTTGTTTGTTGGATTGTATTTTCCTTTGGGTGTTTTTCAAATG
CTGCACTTAGATACATCACTGCTATTTTGTATTTTAATGGTGTCTTGTTTGCTGACATGAATTCATCTGCTATGAAAAGTTAAACGTGCT
TGTTTGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (35)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	9
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	9
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	33
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	4
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	22
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	6
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	17
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	29
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	8
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	21
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	6
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	10
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	18
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	5
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	12
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	13
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	8
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	20
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (288)

Alignment image suppressed for unigene with 288 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 3 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101452	Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ GTPase Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	140
2	118444	Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	138
5	129035	Alpha tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	55

Preceding Unigenes (1)

Unigene	Build
SGN-U212648	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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