Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U581495 and SGN-U593791 in the current build, Tomato 200607 #2

Unigene SGN-U312843

Unigene Basic Information

Unigene ID:	SGN-U312843
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312843
mRNA sequence:	Length: 1204 bp

>SGN-U312843 Tomato 200607 #1 (166 members)
AATACTTTGTCCCCTTATTTGCCACCTTTTGTATTTAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAA
AAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAA
ATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAGCAAGGAGCA
AATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTC
TCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCT
GCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCA
CCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTC
CAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCA
GGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTT
GCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCA
GTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCC
CCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAG
GCCTGATATATATTTTTAGAGGAAATAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAACCAAAAAAAANANNCCTCGGGGGGGGGGCGCG
GGACCCNCCCCCCCGAAGGGGGAGGAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	13
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	32
Solanum lycopersicum	LB	Leaf Mature leaves	3316	5
Solanum lycopersicum	LC	Leaf Mature leaves	5712	17
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	12
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	21
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	10
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	27
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	cTSD	seed	1504	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (166)

Alignment image suppressed for unigene with 166 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101415	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	231
2	118429	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	201
5	128943	Chlorophyll A-B binding protein - Biological Process: photosynthesis light harvesting (GO:0009765) - Cellular Component: membrane (GO:0016020)	163

Preceding Unigenes (1)

Unigene	Build
SGN-U213301	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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