Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578696 and SGN-U592181 in the current build, Tomato 200607 #2

Unigene SGN-U312819

Unigene Basic Information

Unigene ID:	SGN-U312819
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312819
mRNA sequence:	Length: 1321 bp

>SGN-U312819 Tomato 200607 #1 (162 members)
TTAGCAACTGCAATTTGATAACTTATATACTTGATCCCCAAGTAAAACCCACCATTGATTGACTGAGAGTGACCTTTTTTTTTTCCTTTC
TATAACTATAACGTCTTCCTTGATTAATCTTCTGTGTTTTGTACAATGGCCAAGAAATTAGTGAAATACTGTGTGGTGGATGCCTTCACT
GACACAGCATTCAAAGGGAACCCAGCTGCTGTTTGCTTATTGGAAGAAGAGAAAGATGATAAATGGTTACAATCTGTTGCTGCTGAGTTT
AATCTCTCTGAAACTTGTTATCTCATTCCGCTCATTGAACCTGCTAACACAAACCCCAGATTTGGCCTTCGTTGGTTCACTCCTGTTGAC
GAGGTCGATTTATGTGGGCATGCAACACTAGCAGCAGCACACTTTCTATTTTCGTATGGCCTGGTTAAAACTGATACTATTGAGTTTTCA
ACAAGATCAGGAATTTTAATTGCCAAAAAAGTACCAGAACCAAAAGTTTCAAATTCTCAGGACGATTGGCCAACTGGTTACTCAATTGAA
TTGGATTTTCCTGTTGTCCAAGTAGCCGAGACCAATTTTAATGATGTTCTTGCAATTTCAAAGAGCTTGAATGGCGCATCTGTGGTTGAG
ATCTATGAGACATCAATGGGTGATCATTTTATTTTGCTCCCATCAGGGGAGGAAGTGGTCGAATGCCAACCTCAGATTGATCTTATACAA
AACTGCCCAGGCAGAGGAATAATCATAACCGGACCTGCTCCACAGGGTTCCGGCTTTGATTTCTATAGCCGTTTCTTCTGCCCAAAGTTT
GGAATCAATGAGGATCCTGTTTGTGGAAGTGCTCATTGTGCCTTGGCTCCTTATTGGCGCAAAAAGCTTGGCAAATGTGACTTTGTTGCT
TTAGCGGCCTCACCTAGAGGTGGCGTCGTGAAACTGCATCTAGACGATGAGAAGCAGAGGGTATGTCTGAGAGGGAAAGCTGTGGCAGTC
ATGGAAGGTTCTCTTCTAGTCTAATGTTAGCAGTTGAAATGGTCTTTGGTATGAGTTCAGTGTGACTTCTGCAGCAGTCTTCTGTTATTT
ATGTTTCCAGTGTGTTTAAACCTGTTCTGTGTTTTTCCTTCACTAATAAACATCTCCAGTTTCTCAACCATCACCAGTTCATTAGCCTAC
AAGTAGTGCAAGTGTTTTGGTTAATGTGAAATTGTGGAAAGCTATGATAACCATTACGTGCGTTTCGTTCTCTTCGATCTTCTCTTATTC
AGGCTGTGATGCGTATATCTCGCTCTATTTATATTTAAGCTTTACTGTGGCAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	6
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	14
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	53
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	43
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	11
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	6
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	2

mRNA member sequences (162)

Alignment image suppressed for unigene with 162 aligned sequences.
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Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	103002	Phenazine biosynthesis PhzC/PhzF protein - Molecular Function: catalytic activity (GO:0003824) - Biological Process: biosynthesis (GO:0009058)	8
2	120529	Phenazine biosynthesis PhzC/PhzF protein - Molecular Function: catalytic activity (GO:0003824) - Biological Process: biosynthesis (GO:0009058)	8
5	130807	Phenazine biosynthesis PhzC/PhzF protein - Molecular Function: catalytic activity (GO:0003824) - Biological Process: biosynthesis (GO:0009058)	8

Preceding Unigenes (1)

Unigene	Build
SGN-U213011	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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