Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579029, SGN-U579280, and SGN-U593744 in the current build, Tomato 200607 #2

Unigene SGN-U312799

Unigene Basic Information

Unigene ID:	SGN-U312799
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312799
mRNA sequence:	Length: 1647 bp

>SGN-U312799 Tomato 200607 #1 (157 members)
GCGGCCAAATCGGCCGAATTGGGAGTTGAAGCAGGTCGCTTCTAAGTACTGGGCCTTCGCCCTTTCCTATAAAAAGCCGTTACGTCTCTC
CAGTAAGTCATCTCAGCCAACTGGAGTTTATTCTTCTCTCTGTTTTTAGTAAGTACGAAACCCTTTTCTGTAAATCCAAAAAAAATTCCG
ATGGCGATGAGGCGTGTAGCTTCTACAGCAGCTCGTGCTATTGCTTCACCTTCATCCTTAGTTTTTACCAGAGAACTTCAGGCTTCCCCT
GGCCCCAAAAAGATTGTGGGTGTTTTCTACAAAGCAAATGAATATGCTGAAATGAACCCCAACTTTTTGGGCTGTGCAGAAAATGCCTTG
GGGATACGTGAATGGTTAGAGTCTAAAGGTCATCAGTACATAGTCACTCCTGACAAAGAAGGACCAGATTGTGAGCTTGAGAAACACATT
CCTGATCTCCATGTGTTGATTTCGACCCCTTTTCATCCTGCCTATGTCACGGCTGAAAGGATCAAGAAGGCAAAAAATCTACAACTTCTG
CTGACAGCTGGAATTGGATCAGATCATGTTGATCTGAAAGCTGCTGCTGCTGCTGGATTGACAGTAGCAGAGGTCACTGGAAGCAATACT
GTCTCAGTTGCGGAAGATGAACTGATGCGAATCTTAATTCTTGTCCGAAATTTCTTACCTGGACATCATCAGGTTATCAATGGGGAGTGG
AATGTTGCTGCAATTGCGCACAGAGCTTATGATTTGGAAGGCAAGACTGTTGGAACTGTTGGTGCAGGACGTATTGGCAGACTTTTACTC
CAGCGATTGAAGCCATTTAACTGTAATCTACTTTACCATGACCGTCTTAAGATGGATTCTGAGCTAGAGAATCAAATTGGAGCAAAGTTT
GAGGAAGATCTCGATAAGATGCTCTCGAAATGTGACATAGTGGTCATCAATACGCCTCTTACAGAGAAAACAAAAGGAATGTTTGACAAG
GAAAGAATTGCAAAGTTGAAGAAGGGAGTTCTAATTGTAAACAATGCTCGAGGAGCAATTATGGACACTCAAGCAGTTGTTGATGCTTGT
AACAGCGGTCATATTGCAGGATACAGTGGAGATGTTTGGTACCCACAACCAGCTCCCAAGGACCATCTATGGCGTTACATGCCAAACCAA
GCTATGACTCCTCACATTTCTGGGACTACCATTGATGCACAGTTGAGGTATGCAGCTGGAACAAAGGATATGTTGGACAGGTACTTCAAG
GGTGAGGATTTCCCTGCTGAAAATTACATTGTCAAGGATGGGGAATTGGCACCTCAGTATCGCTAAATTATTTATGTATAGAGTTGTGTC
TAGATTTCTGTGTTAAATAAACTGGCAAGCCGTGTCTTCAATAAGCTGATAAAATTGGCTACTTTATGTTCTTCTAGAACTCTAATGCAG
TTTTTCTCCGGGTTAGCTGTAACTTTTGTGATGGAAACATATGTCCTCTTCTGTGATGGAGGTCTATGTATGATCCTCCAGTGTCTTTCT
TGAGTCTATAACTGAACTTCCTTGCTGTGGTAGTTGTACTGGTGTTCCTGGACATTTTATGTTTTAAAAAAAATTATCTTCTTGTTTGCT
AGTAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
fdh	formate dehydrogenase	formate dehydrogenase

Genomic locations (0)

None

Library representation (27)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	8
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	20
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	31
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	9
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	13
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	8
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	7
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	6
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	8
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	13
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	cTSB	seed	1880	3
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (157)

Alignment image suppressed for unigene with 157 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 2 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101571	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding - Biological Process: L-serine biosynthesis (GO:0006564) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616)	70
2	121867	D-isomer specific 2-hydroxyacid dehydrogenase catalytic region - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) - Molecular Function: NAD binding (GO:0051287) D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding - Biological Process: L-serine biosynthesis (GO:0006564) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616)	6
5	132073	D-isomer specific 2-hydroxyacid dehydrogenase catalytic region - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) - Molecular Function: NAD binding (GO:0051287) D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding - Biological Process: L-serine biosynthesis (GO:0006564) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616)	6

Preceding Unigenes (1)

Unigene	Build
SGN-U212994	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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