Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U572728 in the current build, Tomato 200607 #2

Unigene SGN-U312795

Unigene Basic Information

Unigene ID:	SGN-U312795
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312795
mRNA sequence:	Length: 2144 bp

>SGN-U312795 Tomato 200607 #1 (83 members)
CCCTCTCTCTCTGTAACACTTCGATTTGTCTGCTTTCCACTTCACAATCATGGCGGCGGCGGCGGCAACTTCCTTCTCCATCACCACCTC
TACTCCTCCGTCCTCCTCCGCATCATCAACCAAATCCCTAAAACCTTCGCTTGTTGGTAACTTAGGGTTTCTATCCTCGTCAACTCCATC
GCTTAAGCCTCTCAGAGCTCAAGCCGCCGTTTCATCTAGCAGCTCAAACTCCGGCGGAGGCGCGCTTGCGGCTCGCATGGTCGCTGCACC
TGCTACCGTCAAAGCTCCTGCTTCGTTTGATTTTGAAACGTCCGTTTTTAAGAAGGAGAAAGTAACCCTAGCTGGAAATGATGAGTACAT
TGTGAGGGGAGGTAGAGATTTGTTCAAGTATTTGCCGGATGCTTTCAAAGGAATCAAGCAGATCGGAGTTATCGGCTGGGGTTCTCAGGG
ACCTGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAATAAAATCTGACATAGTTGTTAAGATTGGTTTAAGAAAGGGTTCAAGCTC
ATTTGCGGAGGCCCGCACAGCTGGGTTTACTGAAGAGAATGGAACCCTTGGTGACATATATGAGACTATCTCTGGCAGTGATCTAGTGCT
GCTTTTGATTTCTGATGCTGCTCAGGCTGATAATTATGAGAAAGTGTTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCACATGG
ATTCCTCCTTGGCCATTTGCAGTCAATGGGCCTTGACTTCCCAAAGAACATTAGTGTGATTGCTGTATGTCCCAAGGGAATGGGGCCTTC
AGTCAGGAGATTATATGTTCAAGGAAAAGAAGTCAATGGTGCTGGAATTAATTCAAGTTTTGCAGTTCACCAGGATATTGATGGAAGAGC
CACAGATGTTGCTCTTGGGTGGTCTGTTGCCCTTGGTTCTCCCTTTACTTTTGCTACTACTCTAGAGCAGGAATATAAAAGTGACATTTT
TGGGGAACGAGGCATTTTACTTGGTGCTGTCCATGGAGTTGTGGAGTCGCTTTTCAGAAGGTACACTGAGAATGGAATGAATGAGGAGCT
TGCATACAAGAACACTGTAGAATGCATAACAGGAGTCATTTCAAAAACCATATCAACAAAGGGCATGTTGGCTGTGTATGACTCATTGAC
TGAGGAGGGCAAGAAGGAGTTTGAAGCTGCATACAGTGCTTCATTCTACCCCTGCATGGAGATTTTGTATGAGTGCTATGAAGATGTAGC
TACAGGTAGTGAGATCAGGAGCGTTGTCTTGGCTGGCCGCCGCTTTTATGAAAAGGAGGGCTTACCTGCCTTCCCAATGGGGAAAATTGA
TCAAACAAGGATGTGGAAGGTTGGTGAGCGCGTCCGAGCAACCCGACCAGCTGGTGATCTTGGTCCTCTGTATCCATTCACCGCTGGTGT
CTTTGTGGCATTGATGATGGCCCAGATTGAGGTTCTGAGGAAGAAAGGACATTCTTACTCCGAGATTATCAATGAAAGCGTCATCGAGTC
TGTAGATTCTTTGAATCCGTTTATGCACGCTCGTGGAGTATCATTCATGGTTGACAATTGCTCAACAACAGCACGTCTAGGTTCCAGGAA
GTGGGCCCCTCGATTTGATTACAATCTCACCCAACAAGCACTTGTAGCCGTGGATAACAACACGCCTATCAACCGTGATCTCATCAGCAA
CTTCCTTGCAGATCCCGTGCATGGAGCTATTAAAGTGTGTGCTGAACTAAGACCCACAGTTGATATTTCTGTAACAGCAGATGCTGATTT
TGTCCGCCCTGAGCTCAGGCAATCTGTCAATTAAGGGCTTTACGGGTCACTTTGTGAGCGAGCAAGTGAGAATTAGTGATGTTGAGATTT
CATATTGTTGATGTGTGTTGGTGAAGGCAAGAATACTTAAATCTGTTAGCTTATAAGAATCTTAGCCGCTTTTCGTTGTTTAGTTACGTT
GGTACTAGCACTTTTTTATGTAACGAATAACAGATTCAAAATTTGGGAACCCTTGTAGCAACTATAAAATGTGGGTTATGGCAGTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCCGGGGGGGGGGGCCGGACCCCCTTCCCCC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (27)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	14
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	5
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	4
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	5
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTSC	seed	2256	1

mRNA member sequences (83)

Alignment image suppressed for unigene with 83 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101821	Ribosomal L37ae protein - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	35
2	118737	Ribosomal L37ae protein - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	33
5	129184	Ribosomal L37ae protein - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	33

Preceding Unigenes (1)

Unigene	Build
SGN-U213246	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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