Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U572724, SGN-U572725, and SGN-U589263 in the current build, Tomato 200607 #2

Unigene SGN-U312793

Unigene Basic Information

Unigene ID:	SGN-U312793
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312793
mRNA sequence:	Length: 2275 bp

>SGN-U312793 Tomato 200607 #1 (38 members)
TTAAGAATCACAGTTTCATGTCGCCACTTCTCAATTCGGATATGCTGCATATCGTTACCCTAGCAATACTGATCCAAACATAAAAACGTG
ACCCTCATTTCCACTTTCTCTCTCTACACTTTTCACAGTCATCGGCGGCACCTCAACAGAGCAACAATGGCGACACCGGCGACTACTTCT
TTCGCCATTTCCACCTCCTCTTCCTCGGCCGTTTCTTCCTCAAGCAAATCATTGAAGCGTGCTCTTTCCAGTAACTTAGGGTTCCTTTCT
ACTTCTTCTCTGTCGCTTAAGGCTCTCAGAGCTAAATCTTACTCCTACAATGTGTCTAGCTCCGGCGGACCACTTAGTGTTCGTATGGTT
GCTGCTCCTGCTGCTGTGAAGGCACCGATGTCTCTCGATTTTGAAACGTCTGTTTTTAAGAAGGAGAAAGTTACCCTTTCTGGACACGAC
GAGTACATTGTGAAAGGAGGGAGAGATTTGTTCAAGTTGTTGCCGGATGCATTCAAGGGAATCAAGCAGATTGGAGTCATTGGCTGGGGT
TCTCAGGGACCAGCTCAAGCCCAGAACTTGAGGGATTCTCTTGCAGAAGCAAATTCTGATATAGTCGTTAAGATTGGTTTGAGAAAGGGT
TCTCGCTCCTTTGCTGAGGCTCGTGCAGCTGGGTTTACTGAAGAAAATGGTACCTTGGGAGACTTGTATGAAACTATCTCCGGAAGCGAT
CTAGTGCTGCTTTTGATTTCTGATGCAGCTCAGGCTGACAACTATGAAGAAGTGTTTTCTCACATGAAACCAAATAGCATACTTGGTCTT
TCGCATGGATTCCTTCTCGGCCATTTGCAGTCATTGGACCTTGACTTTCCCAAGAACATCAGTGTGATTGCTGTATGTCCCAAGGGAATG
GGCCCGTCTGTCCGGAGATTATATGTACAAGGAAAAGAAATCAATGGTGCTGGAATCAATGCAAGTTTTGCGGTTCACCAGGATATAGAT
GGAAGAGCCACTGATGTTGCTCTTGGGTGGTCAGTTGCCCTTGGTTCCCCCTTTACATTTGCAACCACCCTGGAACAGGAATACAGAAGC
GATATATTTGGCGAGCGAGGTATATTACTTGGTGCTGTCCATGGCATTGTCGAGTCTTTGTTCAGAAGGTACACGGAAAATGGAATGAGT
GAAGAGCTTGCATACAAGAATACTGTTGAGTGCATAACCGGAAACATTTCGAGGACAATATCAACAAAGGGTATGTTAGCTCTATACAAT
TCATTGGATGCGGAAGGCAAGAAGGTGTTCGCGACTGCATATAGTGCTTCATATTACCCTTGCATGGAGATCTTGTATGAGTGCTATGAG
GATGTTGCAACAGGTAGTGAGATCAGGAGTGTTGTCTTGGCAGGTCGCCGCTTTTCTGAGAAAGAGGGGTTACCAGCTTTCCCAATGGGC
AAAATAGACCAGACAAGGATGTGGAAAGTTGGTGAGCGTGTTCGTGCAACACGGCCATCTGGTGATCTGGGTCCTCTCTATCCTTTCACT
GCTGGTGTCTATGTCGCATTGATGATGGCTCAGATTGAGGTTCTGAGGAAGAAAGGCCACTCTTACTCAGAGATCATAAACGAAAGTGTC
ATTGAGTCTGTTGATTCCCTGAATCCTTTCATGCATGCACGTGGAGTGTCTTTCATGGTTGACAATTGCTCTACAACAGCGCGTTTGGGA
TCTAGGAAGTGGGCTCCTCGATTTGATTACAATCTCACCCAGCAAGCACTGGTGGCAGTCGACAATAACCTGCCAATCAATATGGCTCTT
ATGACTGATTTCGTATGTGATCCTGTCCATGAAGCTATTGAAGTTTGTGCCCGATTGAGACCTACTGTCGACATTTCAGTACCTGCAGAT
GCTGACTTTGTCCGTCCCGAGCTCAGACAAACTGTCAACTAAGGTTCTTCTTTGTCTGTCACTTCTATTGAGAAAGAGTATGGCATTAGG
CAGGGCTATGTGTAGTCTGATCGAGCGAGCATTTTCAAAGGTAGAGATCGTTTCTGTATGCTGTGCTTTTTGGGGCGTAAGGAGATCTAC
TTAATAACATATTTCTGTTGGTAAAAAAAAAATTACCTTTTTCTGTTATTATTATTATTATTAAACTACGTGACCTCTGTACTACTACTA
TGGAATTTTATGTATTTTTGCAGATTAACTGAATAAAAACTCAGTTTGGAGTCTCTTTAGCCATGGTATTGATATGCTTTCTCAATCAAA
AGGTTTAATAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	8
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	4
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (38)

Alignment image suppressed for unigene with 38 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101821	Ribosomal L37ae protein - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	35
2	118737	Ribosomal L37ae protein - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	33
5	129184	Ribosomal L37ae protein - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	33

Preceding Unigenes (1)

Unigene	Build
SGN-U213247	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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