Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577425, SGN-U577463, and SGN-U578282 in the current build, Tomato 200607 #2

Unigene SGN-U312762

Unigene Basic Information

Unigene ID:	SGN-U312762
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312762
mRNA sequence:	Length: 918 bp

>SGN-U312762 Tomato 200607 #1 (83 members)
ATCGAAGAGGCGAGAAGCTTAAAAAAACAAAAAAAAAAACCCTTTTTTTGTGTGTCTTGTCTCAATTCCACAACTTTCTTCTTCTCCCTC
TCTCTCTTTCTTTGTAGAAAAATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAGGAGGCTTTCAGCCTATTCGACAAGGAC
GGAGATGGTTGCATTACAACTAAGGAGCTTGGGACTGTGATGAGGTCGTTGGGACAGAACCCAACTGAAGCTGAGCTCCAGGACATGATA
AATGAAGTGGATGCTGATGGTAATGGAACCATCGACTTCCCCGAGTTTTTGAACCTCATGGCCAGGAAGATGAAGGATACAGACTCAGAG
GAGGAGCTAAAGGAGGCATTCAGAGTGTTTGACAAGGACCAGAATGGGTTCATCTCTGCTGCTGAGCTCCGTCATGTGATGACTAACCTT
GGTGAGAAGCTCACTGATGAAGAAGTTGATGAAATGATCAGAGAGGCTGATGTCGATGGCGATGGACAAATTAACTACGATGAGTTTGTT
AAGGTCATGATGGCCAAGTGATTTCCCTCTTCTGAAGTTGTTTTTTTAAGAAAAAAGACCAAACATTCATCAGACTTGGTCAGCTTTGGG
ATAATGGTTTCTTTTTACAAATTTATCCTGTTACGCTGTACCTTTGGATGAATGTAATGCTCTCTATCGTTTGGTGGTTGGATCAGTTTC
TTTCTCTTATTTGGTTGTCTGTGATGTCTTATCTTGTCTTGTACCTCGGCTGATAAAGTTGTAAGGTTCCTATTTAGAGCTTTGTTGAAC
CTAGACTGTTACTTTTTATTTATTTATTGACAAATTCAGTTCTAAAAAAAAAAAAAAAAAAATTTATTAATGCAAACTTTTTGACTCTGG
AAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
calm2	calmodulin TOMCALM2LE

Genomic locations (0)

None

Library representation (30)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	11
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	5
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	7
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	cTSD	seed	1504	6
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	4

mRNA member sequences (83)

Alignment image suppressed for unigene with 83 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101361	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468) Protein kinase-like	1515
2	118408	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	587
5	128952	Calcium-binding EF-hand - Molecular Function: calcium ion binding (GO:0005509) EF-Hand type - Molecular Function: calcium ion binding (GO:0005509)	130

Preceding Unigenes (2)

Unigene	Build
SGN-U212852	Lycopersicon Combined #3
SGN-U212855	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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