Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577553 in the current build, Tomato 200607 #2

Unigene SGN-U312755

Unigene Basic Information

Unigene ID:	SGN-U312755
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312755
mRNA sequence:	Length: 1192 bp

>SGN-U312755 Tomato 200607 #1 (31 members)
GGCGATTGGCGGCCAAATCGGCCGAATTTGAGGGGGTTTTGTGCTTTTGTAAGTTTGAGAAAGAGGAAAAAGAAAAATGGGAAGGGGTAG
GGTTGAGCTAAAGAGAATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCTAAGAGAAGAAATGGGCTTTTGAAGAAAGCTTATGAGCT
TTCAGTTCTTTGTGATGCTGAGGTTGCTCTAATCATCTTCTCTAATAGGGGAAAACTCTATGAGTTCTGCAGTAGTTCTAGCATGCTAAA
GACGTTGGAGAGGTACCAGAAGTGCAACTATGGAGCACCTGAACCGAATATATCAACACGAGAAGCACTGGAAATTAGTAGCCAGCAGGA
GTACTTGAAGCTTAAAGGACGTTACGAAGCATTGCAGCGATCACAGAGGAATCTTCTTGGTGAAGATCTTGGTCCTTTGAACAGCAAAGA
ACTTGAATCACTTGAGAGACAACTTGATATGTCGCTCAAACAGATCAGATCAACTCGGACTCAGTTAATGTTGGATCAACTTACAGATTA
TCAGAGAAAGGAACATGCATTGAACGAAGCCAACAGAACCTTGAAACAAAGGTTGATGGAAGGAAGCCAACTAAATCTGCAGTGGCAGCC
AAATGCACAAGATGTGGGCTATGGCCGGCAAACAACTCAAACTCAGGGCGATGGCTTCTTTCATCCTTTGGATTGTGAACCTACTTTGCA
AATTGGGTATCAGAATGATCCAATTACAGTAGGAGGAGCAGGGCCTAGTGTGAATAACTACATGGCTGGCTGGTTGCCTTGAAGGCTCAC
GATTCTGATCATAACATTATTATAAATATGCTCAATGGTTTTCCTATCATCATAAACATTGAATATCTCCTAATTTCTGTATGTTGTTTG
AGAAAATGTTTCATCCTGGACCTAACGGGGATCCATAAGACAATCCCGTTATTGTTAGTAAATCATAAACTAGATTTCTTTGAGTGCTTA
AAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTGGTGTTTCTCTCTTGGCTCTCTTTAAGGAGAAGAAGGAGAAACCAAGATTTTAA
TTTTGCCATTTTGCCAAGATACTGTTGCCATGGACTTCTAGTTTTCTTGAGTATGTACTTTGTGAGCAACCATCTTTAAAGTAGTCACAT
TGCACCGAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
sep3	SEPALLATA3	MADS-box transcription factor

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	5
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	4
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	vSlycmRNA		8362	4

mRNA member sequences (31)

Alignment image suppressed for unigene with 31 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 2 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101412	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	242
2	118437	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	170
5	128950	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	149

Preceding Unigenes (1)

Unigene	Build
SGN-U213167	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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