Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578252 and SGN-U579320 in the current build, Tomato 200607 #2

Unigene SGN-U312724

Unigene Basic Information

Unigene ID:	SGN-U312724
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312724
mRNA sequence:	Length: 1611 bp

>SGN-U312724 Tomato 200607 #1 (182 members)
TTTCCTCTTATTTTATAATAATATAATAAAACATTATATTCCCTCAATTATTGTTTCACTCTTCATTGCTTGGGAGTACTCAAAAGTTTT
TAAATATCGTAAAACAAGTACAACATGGGGGAAGTTACCAATGTGATGGAGTTTGAAGCAATTGCAAAGCAAAAGTTGCCAAAAATGGTG
TATGACTACTATGCATCTGGAGCAGAGGATCAATGGACTTTGGCTGAGAACAGAAATGCCTTTTCAAGAATTTTGTTTAGGCCTCGTATT
CTTATTGATGTAAGCAAGATTGACTTAAGCACAAGCGTGCTCGGTTTCAATATCTCAATGCCTATCATGATTGCACCAACAGCTATGCAG
AAAATGGCTCATCCTGATGGTGAGTATGCTATAGCAAGAGCAGCATCGGCAGCAGAAACAATTATGACACTGTCGTCTTGGGGAACTTCA
AGTGTCGAGGAGGTTAATTCAACAGGACCTGGCACCCGTTTTTTCCAGCTCTATGTCTATAAGGACAGAAATGTAACAATTCAGTTGGTG
CGAAGAGCTGAAAGAGCAGGTTTTAAGGCTATAGCTCTTACAGTTGATACCCCGAGATTGGGACGTAGAGAAGCTGATATTAAGAACAGA
TTTAATTTGCCACCACATTTGTCACTGAAGAACTTTGAAGGACTGGACATTGGCAAGCTGAACAAAGCTGAGGACTCTGGATTGGCTTCA
TATGTCGCTGGTCAAGTTGATCGATCATTGAGTTGGAAGGATGTTCAATGGCTACAGTCAATTACTTCACTGCCAATCCTGGTAAAGGGT
GTACTTACAGCTGAAGATGCTAAGATTGCAGTTCAGTCTGGAGCAGCTGGTATCATTGTGTCGAACCACGGTGCTCGACAACTTGACTAT
GTCCCTGCCACAATTATGGCTCTTGAAGAGGTTGTGAAAGCTGTACAAGGCCGTATCCCCGTGTTCCTGGATGGAGGCGTTCGTCGTGGA
ACAGATGTCTTTAAAGCGCTGGCGCTTGGTGCATCAGGCGTGTTTATTGGGCGACCAATCATTTGGTCATTGGCTGCTGATGGAGAAGCT
GGTGTCAAGAAAGCACTGCAGATGATACGCGATGAGTTTGAGCTAACGATGGCATTGAGTGGCTGTCGTTCACTGAAGGAGATTACGCGT
AACCATGTCATGACTGATTGGGAGACTCCACGGGCTTCTCTTCCCGTGCCACGGTTATAAACATCAGAGAAGACAGAAGACCTTTGGTGT
TAAATTGTTTCACCAAGGCAAAATGTTCAGTTTCCATTCATGTTCCAAATGCCCCTTGTGATCTAGCCCTTCTCCAGACTCTGCGCGTAG
TGAAAGCTTAGTGCATCGAGTTTGCCTTTTGAATAACTTATCTATCTTTCATTGGAACATTTATTTTTGTGTGATGAGTTTGCATTATGT
ATATTTTTGATAAATGACTAGAGATGCCTCCATTGGGTATTCTCTAATCATTATTTTCTTAATAAGAATGTCTGTTTTTGTGGGATAAAA
AAAAAAAAAAAAAAGTAATATATATTGTCGATCGATATAAGTAATTTTTATATTATCGGATATATCTCCTTTAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
glo2.1	glycolate oxidase	glycolate oxidase

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	10
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	7
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	14
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	15
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	54
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	22
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	28
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (182)

Alignment image suppressed for unigene with 182 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 4 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101881	FMN/related compound-binding core	31
2	118906	FMN/related compound-binding core FMN-dependent alpha-hydroxy acid dehydrogenase active site - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) FMN-dependent alpha-hydroxy acid dehydrogenase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	26
5	129361	FMN/related compound-binding core FMN-dependent alpha-hydroxy acid dehydrogenase active site - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) FMN-dependent alpha-hydroxy acid dehydrogenase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	24

Preceding Unigenes (2)

Unigene	Build
SGN-U212963	Lycopersicon Combined #3
SGN-U232242	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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