Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U583026 and SGN-U583027 in the current build, Tomato 200607 #2

Unigene SGN-U312714

Unigene Basic Information

Unigene ID:	SGN-U312714
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312714
mRNA sequence:	Length: 2348 bp

>SGN-U312714 Tomato 200607 #1 (116 members)
CGGCCGAATTGCCCCCTTCTCTCAACCCATTATAAAAACACATAGTGTGGCCTCAGAAAAAAACAGAAACAAAAAAAAAATGGATTTCAT
CAGAATGAAAATATGTCTTTCTGTCTTATTTTTTTTCCATGTTTGGTTTTGTAGAGCTTTTAATGATGTCTCAACAATTCCTTTTAACAA
AGGATTCAGCCATCTCTTTGGTGATGGAAATATTCTTCATGCTAACGATGATAACAGCCTTCAACTTCATCTCAACCAAAACACAGGTTC
AGGGTTCAAGTCTTCTGACCTTTACAACCATGGTTTCTTCAGTGCTAAAATTAAATTGCCATCAGATTATACTGCAGGAATAGTTGTTGC
CTTCTATACGACGAATCAAGATGTATTTAAGAAGACACACGATGAACTAGATTTTGAATTTTTGGGAAATATAAAAGGAAAAGCATGGAG
ATTTCAAACAAATATGTATGGAAATGGAAGCACACATAGAGGAAGAGAAGAAAGATATACTCTATGGTTTGATCCTTCTAAAGAGTTCCA
TCGTTATAGTATTTTGTGGACCAACAAAAACATCATATTTTATATAGATGATGTTCCAATTAGAGAAATTGTAAGAAATGATGCAATGGG
TGGAGACTACCCATCAAAGCCAATGGGCCTATATGCAACAATTTGGGATGCTTCAGATTGGGCTACTTCAGGTGGAAAATACAAAACAAA
TTACAAATATGCACCATTTATAGCTGAATTTACTGATTTAGTACTCAATGGATGTGCAATGGACCCATTGGAACAAGTTGTAAACCCTAG
TCTTTGTGATGAAAAAGATGTTGAACTCCAAAAGTCGGATTTTTCAAGGATTACATCGAGACAAAGAATGTCCATGAAAAGATTTAGGGC
GAAATATATGTACTATTCTTACTGTTACGATTCATTGAGATACTCAGTGCCACCACCAGAGTGCGAGATTGATCCAGTTGAGCAACAACA
TTTTAAAGAGACTGGAAGGTTGAAGTTTATAAACAAGCACCACGGACATCGTCATCCTAAGAAAACAAAAAGTGAAGTTCTTGATGCTAG
GAAGTATGGAAATGAAGATGAAGAGTGATTCAAAGTTTTGTTTACTAATAGTAATATTGTTGGTGTGTATATAGATAAAAGGAGGGAAAG
AGTGAATTCGTTTATTTTTCTTGGATTATAGATTTTGTTATAGGATATATTGTCAGAGTGAAGGGTGAAAAATGATTATATATAAAGTGT
GAACACTGATTGAGTAGTTATATTGTAATATAAATAAAGAGATTGAATTATGTAAAAAAAAAAACTATTAAAGACTCCAAAAAAAAATCT
ATAATCCAAGAAAAATAAACGAATTCACTCTTTCCCTCCTTTTATCTATATACACACCAACAATATTACTATTAGTAAACAAAACTTTGA
ATCACTCTTCCCACTCTTTAGGAATATTCATCATAGTCCAGACAATTTTCCTGAACCAGAGAAATTTGATCCTTCAAGATTTGAGGTGTC
ACCAAAACCCAATACATTCATGCCATTTGGCAATGGGGTCCACTCATGTCCAGGGAATGACTTAGCCAAGCTGGAGATTTTGATCCTTGT
ACATCATCTGACCACAAAGTACAGGTGGTCTATGGTGGGCCCACAAAATGGAATTCAGTATGGGCCATTTGCTCTTCCCCAAAATGGTTT
ACCCATTAAACTCTCTCTCAAAACATCATCAACATAACCCTAACAATCAATTTGAGATGAAAAAAAATTATAATATATATTTATTATACA
AATATAAGTTTGGGATCTCACATAGAGGCCGGTCTAAAAGACGAGACAAATTAAGAAGGACGTCATACAAGTTTGATCAATCTGAATGTC
ACAATCATCATCAGGACAACAAACATCACACGAGCTTGACTAGTCCAAAAGGCATGATCAAGGACAAACACAAGCATTATACGAGGTTGA
TCAGTTCAAGAACCACGACTAGGCATTACACGAGCTTGATCAGTCCAAAAGGCGCGACCAAGACCTAGACAAGCACATAAGTTTGAGGAC
CTAAAATTGTAAATACAAAGAGTTCCCATAGTACTTGAGATATAGTACACCACAAAGGGTATGGTTCATTTTTTTTTCCTTAAAGAAAAG
GAGAAAAATAAGAAGGTAATTTATTAGTGTATCACATATAGTAATAGGAATTTATTTTTATTTTTTTGTAATTTTATTTTAATATTTTAG
TTTTTAAAATATTCTGACATGTAAAAGAAGTCCGTAAGGCAATTAATAAAAGGTTGATTTAGACAAAAAAAAAAAAAAAAAACTCGAGAC
TAGTTCTC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc08g005610	xyloglucan endotransglucosylase-hydrolase	xyloglucan endotransglucosylase-hydrolase

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	9
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	18
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	6
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	9
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	10
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	28
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	12
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	7

mRNA member sequences (116)

Alignment image suppressed for unigene with 116 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (17)

Annotations (manual: 2 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101462	Xyloglucan endo-transglycosylase C-terminal - Cellular Component: cell wall (GO:0005618) - Biological Process: glucan metabolism (GO:0006073) - Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762) - Cellular Component: apoplast (GO:0048046) Concanavalin A-like lectin/glucanase subgroup Glycoside hydrolase family 16 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Concanavalin A-like lectin/glucanase	129
2	118454	Glycoside hydrolase family 16 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Xyloglucan endo-transglycosylase C-terminal - Cellular Component: cell wall (GO:0005618) - Biological Process: glucan metabolism (GO:0006073) - Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762) - Cellular Component: apoplast (GO:0048046) Concanavalin A-like lectin/glucanase subgroup Concanavalin A-like lectin/glucanase	122
5	128954	Glycoside hydrolase family 16 - Molecular Function: hydrolase activity hydrolyzing O-glycosyl compounds (GO:0004553) - Biological Process: carbohydrate metabolism (GO:0005975) Xyloglucan endo-transglycosylase C-terminal - Cellular Component: cell wall (GO:0005618) - Biological Process: glucan metabolism (GO:0006073) - Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762) - Cellular Component: apoplast (GO:0048046) Concanavalin A-like lectin/glucanase subgroup Concanavalin A-like lectin/glucanase	122

Preceding Unigenes (2)

Unigene	Build
SGN-U213423	Lycopersicon Combined #3
SGN-U213444	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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