Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U572928 and SGN-U578034 in the current build, Tomato 200607 #2

Unigene SGN-U312676

Unigene Basic Information

Unigene ID:	SGN-U312676
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312676
mRNA sequence:	Length: 2929 bp

>SGN-U312676 Tomato 200607 #1 (146 members)
ATCGGCCGAATTGACTTCATAAGCTGTTAGTTTCACGTTCTCTTCGCAATTTCCATTACAGCCGCTAGGTTTCCGTCCACTTCTTCTTCT
CCATTAATATCTGTATGGTGTTCTTCTTTTTTGAATTCTAGATTTTTTCTTTGAATTCTTGTTAATCTTTAATTTTCTTTGTTTAAATCA
AGAAATTAGCTTCTTCTGAAGTCAGGGTGGGGATTTTTGGATCGTGTCAAAGTGTGTTAGAGGGTGATTATCTTTTGATTCACTTGTTTT
TTTGCTTCTTTTGAGGGGGTAGCCGGGGCCTCGGCCTCGGCGGGTTTTAATAGCCCCCAACTATTACAACATTGGGAAGAAGAACATCAA
TCTGTACAAACCCTTAAGTTAGTTTTTCTTTTTAATTCTTTGATTCTTTCTTCTTAACAAATCAAAACAGATCGGGGAAGAGATGCCGGC
CTTAGGTTGTTGTGTAGACGCTTCTGTTTCCCCTCCTCTCGGCTATGCCTTTTCTTGGGATAGCTCTCTTCCCGCGCCGGAGTTGTTTTC
CTCCGGCGTACCTCCGGCGACAAACGCCGCCGCCGTTTCCACCGGTTCTCATTGGTCTACGGATCTGTCATCTGATTTGTACCGGGTAGA
TGGGTGGGGTGCTCCTTATTTCTCCGTGAACTCTTCCGGGGATATTTCCGTCCGTCCACATGGTACGGATACTCTTCCTCACCAGGAGAT
TGACCTTCTTAAGGTTGTGAAGAAGGCTTCTGACCCGAAAAATTTGGGTGGACTTGGGCTCCAGATGCCTCTTGTTGTCCGTTTTCCTGA
TGTTCTGAAGAACCGTTTGGAGACTCTGCAATCGGCTTTTGACATGGCGATTAATTCTCAAGGCTATGAGGCTCACTATCAAGGTGTTTA
TCCGGTGAAATGCAATCAAGATAGGTTCGTGGTGGAGGATATCGTGAAATTCGGGTCGCCATACCGATTCGGGCTGGAAGCCGGGTCTAA
ACCGGAGCTCCTGTTGGCGATGAACTGTCTGTCAAAGGGCAGTGCTGATGCTCTTCTTGTTTGCAATGGTTTCAAGGACACTGAGTATAT
TTCGCTTGCTTTGGTCGCAAGAAAGCTCCTTTTGAACAGTGTGATTGTGCTTGAACAAGAGGAGGAGCTTGACCTGGTGATTGATATCAG
CCGTAAGATGTCTGTCCGGCCTGTAATTGGACTTCGTGCTAAGCTCAGGACAAAGCATTCTGGCCATTTTGGATCCACTTCTGGTGAAAA
GGGTAAGTTTGGGTTGACAACAACCCAGATTCTTCGTGTAGTGAAGAAGCTTGATGAATCTGGAATGCTGGATTGTCTCCAGTTATTGCA
TTTTCACATTGGATCTCAGATCCCCACAACAGAGTTGCTTGCTGATGGTGTTGGTGAGGCCACTCAGATTTACTCTGAATTAGTCCGTCT
TGGAGCTGGTATGAAATTCATTGATATCGGAGGGGGGCTTGGAATCGACTATGACGGTTCTAAATCAAGCAATTCTGATGTCTCTGTTTG
CTATAGCATTGAAGAATATGCCTCTGCTGTTGTCCAAGCGGTCCTCTATGTCTGTGATCGTAAGGGCGTAAAGCATCCAGTGATTTGCAG
CGAAAGTGGCAGGGCAATTGTTTCTCACCATTCAATTCTGATTTTTGAAGCCGTGTCTGCTTCTACTAGTCATGTTTCTACACAGCCATC
TTCGGGTGGTTTACAATCCTTGGTGGAGACTCTCAATGAAGATGCCCGTGCTGACTACAGAAACTTATCTGCTGCTGCTGTCCGTGGAGA
ATATGATACATGTCTCATCTATTCTGATCAGTTGAAACAGAGATGTGTTGAACAGTTCAAAGATGGGTCCTTGGATATTGAGCAGCTCGC
TGCAGTGGATAGCATTTGTGATTGGGTGTCGAAGGCTATCGGGGTTGCTGATCCTGTCCGCACTTACCATGTGAATCTGTCAGTTTTCAC
CTCAATCCCTGATTTTTGGGGCTTCAGCCAATTGTTTCCTATTGTTCCAATTCACCGTCTGGATGAAAAGCCTACAATGAGAGGAATACT
GTCTGACCTGACGTGTGACAGTGATGGAAAGGTTGATAAGTTCATTGGGGGCGAATCAAGCTTGCCGCTCCATGAAATTGGAAGTGGTGA
TGGTGGGCGGTATTATCTGGGGATGTTTTTGGGTGGGGCTTATGAGGAGGCGCTCGGAGGACTCCACAATCTATTTGGTGGACCAAGCGT
TGTTCGGGTGATGCAGAGCGATAGCCCTCACAGCTTTGCGGTGACTCGCTCTGTCCCTGGTCCATCGTGTGCTGATGTGCTCCGGGCGAT
GCAGTTTGAGCCTGAACTCATGTTCGAGACTCTCAAGCACCGTGCAGAGGAATTCTTGGAACAAGGAGAAGGAGAAGGCGAAGGTGTTGC
CTTTGGATCTTTGACCAGCAGCTTAGCTCAGTCCTTCCACAACATGCCTTACCTTTCGTCTTGCTGCTTCACTGCAGAAGCCACTGCCAA
TGCCAATACCAATACCAATAATGGTGGCTATTACTATTACAGTGAAGACAATGCTGCAGCAGAGGAAGATGAGATTTGGTCCTACTAAAC
TCTGCTTGAAGTGTCTCTTGTTAGCATCTCCAGTTTGTTTTAGTTTGTGGTCGAGGTCGTCTGTTTTTTTATAATAATCCCACCCCTTAG
TTTGGGTGCATGTTAATTACTTTTGTTTGCAATAGATGCAGTAGACTGTCATCTCCTATTGCAACTAAGCTTATGTTATGACCGCAATCA
GTTTTATATTAATGCTGTCTTTTTTTGTTTCAAAAAAAAAAAAAAAAAAAAAACTCGAACAAGCTCCAGCAAAAACAGTGACCAACAAGA
CCTCGCTACAGTTGCTGCTCCGATCAGGAATTGGGAAGCAAATCAAAGA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
TOMARGDECA	arginine decarboxylase	arginine decarboxylase

Genomic locations (0)

None

Library representation (28)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	5
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	11
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	6
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	9
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	31
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	9
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	7
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	18
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (146)

Alignment image suppressed for unigene with 146 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101407	Orn/DAP/Arg decarboxylase 2 - Molecular Function: catalytic activity (GO:0003824)	255
2	119696	Orn/DAP/Arg decarboxylase 2 - Molecular Function: catalytic activity (GO:0003824) Arginine decarboxylase - Biological Process: arginine catabolism (GO:0006527) - Biological Process: spermidine biosynthesis (GO:0008295) - Molecular Function: arginine decarboxylase activity (GO:0008792)	13
5	130022	Orn/DAP/Arg decarboxylase 2 - Molecular Function: catalytic activity (GO:0003824) Arginine decarboxylase - Biological Process: arginine catabolism (GO:0006527) - Biological Process: spermidine biosynthesis (GO:0008295) - Molecular Function: arginine decarboxylase activity (GO:0008792)	13

Preceding Unigenes (1)

Unigene	Build
SGN-U212948	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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