Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577594, SGN-U579973, SGN-U580784, and SGN-U593628 in the current build, Tomato 200607 #2

Unigene SGN-U312586

Unigene Basic Information

Unigene ID:	SGN-U312586
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312586
mRNA sequence:	Length: 1723 bp

>SGN-U312586 Tomato 200607 #1 (144 members)
TTTTTTTTTTTTTTTTTAGTCCAGCAAATTAATGAATGTTGCTATTCAGACAACAATTGGTTCGTATTCCACATATATAAATACCACAAC
AGTTGCTCCTAAAACCATATACACATTGTTTTTGTTTCCATAAAACAAACCAAAAGGCAAAAAGCTAAAGTGTTTCACAACTTCTTTTTC
ACAATCTTTGAACATTCAACTTCTTTTCTCAATTACACCAATCAAATATTCAAAACGTAGTTCTCCAAGCTCCGAATTAAAATGGAGCCT
TAAACACCAATACTCAGCTGATGAGATGTTCAGATAGCAGTAGAATAGATACACGGTGGAAGTAAATGCGGCACGTCAGCAACATCTTCG
TCTAGTTCCTCATTATGCCAAAGCCTTAATTTCATATTACAGAATACAAACATCTGATTATTTTCATCTTTCATTCCATTCATATACTCT
GTGCAAGATTGGAATCCAAGGCTGTGTTGTTTGACTAGTTTGTGAGCATAGCTACATCTATGAATACACATGGTTTTCTCTTCTACAAAA
TAATAGAATTCCTCAGCATAATACCTGCATCGTTCAGTGCTTGTGCTCTGCTCGTGCCATTCGTTTAACCTTATCGCATTTCCATTTCTG
CTTCTTCAGAACAATTACTATGGGTAAGTGCTATCCTACTGTGAGCGAGGAGTACCTCAAGGCTGTTGACAAATGTAAAAGGAAACTCAG
AGGACTCATTGCTGAGAAGAATTGTGCTCCTATTATGCTCCGTCTTGCATGGCACTCTGCTGGTACCTACGATGTGTGTTCCAAAACTGG
TGGTCCTTTTGGTACCATGAGGTTCAAAGCGGAGCTAGCACATGGTGCAAACAATGGTCTTGACATTGCTCTCAGACTCTTGGAGCCCAT
TAGGGAGCAGTTTCCCACCCTCTCCCATGCTGATTTCCATCAGTTGGCTGGTGTTGTTGCTGTTGAAGTTACTGGAGGACCTGATGTTCC
CTTTCACCCTGGCAGAGAGGACAAGCCAGAGCCACCAGTGGAAGGTCGCTTGCCGGATGCCACCAAGGGCTGTGACCACTTGAGAGACGT
GTTCAAGAAACAAATGGGTCTTTCTGACCAGGATATTGTTGCACTCTCTGGTGCCCATACCTTGGGAAGGGCACACAAGGAGCGTTCTGG
TTTTGAAGGACCTTGGACTGCCAATCCCCTTATCTTTGACAATTCATACTTCAAGGAGCTTTTGAGTGGGGAAAAAGAGGGGCTCTTACA
GTTGCCGTCAGACAAGGCTCTCCTTTGTGATCCTGCTTTCCGTCCCCTTGTTGAGAAATATGCTGCGGATGAAGATGCCTTCTTTGCTGA
CTATGCTGAGGCTCACTTGAAGCTTTCTGAATTGGGATTTGCTGAAGCTTAAGATGCTGATTGGAAGAGCTGGGAGTGGTGACATATTTT
TGTTAATGGTTCATTTCTGAAAAGCTTGCTGGAGCTGTTGTTTTTGCTGCTCTTTATATATCATGATTTAAATTTGGCAGCTACGTTAGA
CGATGATATTGTGACACTCTTCCAGCTTATTAATAAATTTCTAGTATTTTGTTTTTGTGGTTTAAAAAAAAAAAAAAAAAAAACTTGGCT
GAACTTGGTATGTTAAGGAAAAAAATGCACTCAGTTGTCTAGGAAGACTTGCGTGATTGAGAACAACATAGAATTATTGGACTGATTCTA
TCCAGTCATGTAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
apx1	cytosolic ascorbate peroxidase 1

Genomic locations (0)

None

Library representation (30)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	23
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	9
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	9
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	11
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	4
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	11
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	7
Solanum lycopersicum	cLES	leaf 4 weeks	5243	11
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	4
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	6
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	6
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	3

mRNA member sequences (144)

Alignment image suppressed for unigene with 144 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101394	Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase	328
2	118594	Plant ascorbate peroxidase - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979)	46
5	129165	Plant ascorbate peroxidase - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979) Haem peroxidase Haem peroxidase plant/fungal/bacterial - Molecular Function: peroxidase activity (GO:0004601) - Biological Process: response to oxidative stress (GO:0006979)	34

Preceding Unigenes (1)

Unigene	Build
SGN-U213035	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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Event Web URL: