Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580783 in the current build, Tomato 200607 #2

Unigene SGN-U312579

Unigene Basic Information

Unigene ID:	SGN-U312579
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312579
mRNA sequence:	Length: 1728 bp

>SGN-U312579 Tomato 200607 #1 (132 members)
AATCGGCCGAATTCCCATGGGGATCCGCTGACACAGATCCAAATCTCTTCTAATTTCTTCTCATCAGAAAAAAAAAAATCTTCAATTTTT
CGAAGAGCAGACATGGAAACTTTCTTGTTTACCTCAGAGTCAGTCAACGAAGGTCACCCCGACAAGCTCTGTGACCAGGTCTCAGATGCC
ATTCTTGATGCTTGCCTGGAGCAGGATCCCGAAAGCAAGGTTGCATGTGAAACCTGCACAAAGACAAACATGGTTATGGTCTTTGGAGAG
ATCACAACCAAGGCCACCGTAGACTACGAGAAGATCGTACGTGACACATGCAGAGGCATTGGGTTCGTCTCAGCAGATGTTGGTCTTGAT
GCTGACAACTGCAAGGTCCTTGTTAACATTGAACAACAGAGCCCTGACATCGCCCAAGGAGTTCACGGTCATCTTACCAAGAAACCAGAA
GAAATTGGAGCTGGTGACCAAGGTCATATGTTTGGGTATGCCACAGATGAAACTCCTGAGCTCATGCCCCTCACCCATGTTTTGGCCACC
AAGCTTGGTGCCAAGCTTACTGAAGTGAGGAAGAACAAAACCTGCCCATGGCTCAGGCCCGATGGCAAGACCCAAGTTACTGTTGAGTAC
AAGAACGACAATGGTGCCATGGTCCCTATTAGAGTTCACACTGTTCTCATCTCAACCCAGCATGACGAAACTGTCACCAACGACCAGATC
GCCCAGGACTTGAAAGAGCATGTGATCAAGCCTGTGATCCCAGCTAAGTACCTTGACGAGAACACCATCTTCCACCTCAACCCATCAGGT
CGCTTCGTCATTGGTGGTCCACATGGAGATGCTGGTCTTACTGGCAGGAAAATCATCATTGATACCTACGGAGGCTGGGGTGCTCACGGT
GGAGGTGCCTTCTCAGGAAAGGACCCCACTAAGGTGGACAGGAGTGGTGCTTACATTGTTAGGCAGGCAGCAAAGAGTGTGGTCGCCTCA
GGACTTGCTCGCCGCTGTATTGTGCAGGTTTCTTATGCTATCGGTGTGGCTGAACCACTTTCCGTGTTTGTTGACACATACAAGACAGGA
ACAATTCCCGACAAGGACATTTTGGTTCTGATCAAGGAGAACTTTGACTTCAGGCCTGGAATGATGTCAATCAACCTTGATTTGTTGAGA
GGAGGCAACTACAGGTACCAGAAGACTGCAGCTTACGGTCACTTTGGCCGTGATGACCCCGATTTCACCTGGGAAACTGTCAAGGTCCTC
AAGCCAAAAGCTTGAGTGTGAGGTCTTGCATTACAATTTTTTGGCCAGTTGAGTTTGTTTCTACTGGCCATTATTCTTGTCGCGGACCAA
TAAACAAGCTTCATCATATCATACATTGATATCGATATTGATATTTGTTTTCAAGGCTGCATTGGTGCTGGAAGAAGACAACAAGCGTTT
CTATTCCGAGTCACTGAACATTTGTTATTTTCCTATTTCTTTCTTCACCCTTTTCTGCAGTACCTTATTTCTATTTTGTAATGGTTATTG
AGTAGCTATAATTTAAGTTCTCCTTGTTTTATCCAATTTATATATCTTTTTATCATAGTCTGATGAAATTTGTTTATTGTGATCATCTTA
TCATAATGAGAAATGCTAGAAACATATTGTATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGGGGCCGGGAC
CCATTTCCCCCAAAAGGG

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Z24743	S-adenosyl-L-methionine synthetase Z24743

Genomic locations (0)

None

Library representation (27)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	6
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	21
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	5
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	10
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	4
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	6
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	9
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	8
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	5
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	6
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	6
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	5
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	6
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	4
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (132)

Alignment image suppressed for unigene with 132 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 2 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101580	S-adenosylmethionine synthetase - Molecular Function: methionine adenosyltransferase activity (GO:0004478) - Molecular Function: ATP binding (GO:0005524) - Biological Process: one-carbon compound metabolism (GO:0006730)	69
2	118574	S-adenosylmethionine synthetase - Molecular Function: methionine adenosyltransferase activity (GO:0004478) - Molecular Function: ATP binding (GO:0005524) - Biological Process: one-carbon compound metabolism (GO:0006730)	50
5	129058	S-adenosylmethionine synthetase - Molecular Function: methionine adenosyltransferase activity (GO:0004478) - Molecular Function: ATP binding (GO:0005524) - Biological Process: one-carbon compound metabolism (GO:0006730)	50

Preceding Unigenes (1)

Unigene	Build
SGN-U212955	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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