Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580567 in the current build, Tomato 200607 #2

Unigene SGN-U312575

Unigene Basic Information

Unigene ID:	SGN-U312575
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312575
mRNA sequence:	Length: 1073 bp

>SGN-U312575 Tomato 200607 #1 (51 members)
CGCATTTAGGTCACAGTTACATTCTCTCTTGCCCTCCCGCCGATCAGAGCCATTCTCTTCAACAATTTCAAGAGATGGGTGAAACACCAG
TTCCAGAGTCAGTTTTGAAGAAGCAGAAGAGGAGCGAGGAATGGGCTCTTGCAAAGAAGCAAGAACTTGAATCTGCAAAGAAGAAGAATG
CTGAGAACAGGAAATTGATCTACAACAGGGCAAAGCTGTATGCAAAGGAGTATGCAGAACAGGACAAGGAATTGATCCGTTTGAAACGTG
AGGCTAGATTGAAAGGTGGTTTCTATGTGGATCCTGAGGCAAAGTTGTTGTTTATCATCAGAATACGCGGTATTAACGCTATGCCCCCAC
AGACCAAAAAGATTTTGCAGCTACTACGTTTGCGCCAGATCTTTAATGGTGTCTTTTTGAAAGTCAACAAGGCCACAGTGAACATGTTGC
ATAGGGTTGAACCTTACGTTACCTATGGTTACCCAAACCTAAAGAGTGTTAGGGAATTGATCTACAAAAGAGGTTACGGAAAACTTGACA
AGCAGAGAATTCCTTTAACCGACAACTCTGTCATTGAGCAGGGATTGGGCAAACATGGAATTATCTGTGCTGAAGACCTTGTCCACGAGA
TCATGACTGTCGGGCCCAGCTTCAAGCAGGCCAACAACTTCCTATGGCCATTCCAGCTGAAGGCACCTTTGGGTGGACTCAAGAAGAAGA
GAAATCACTACGTTGAAGGTGGAGATGCTGGTAACCGCGAGAACTTCATTAACGAACTTATCAGGAGGATGAACTAGAGTGCCTGAAATT
TTGTTTTCTAGGCATTTTTAGTGATCAACAGTTCAGAATTTCTTCCATTTGAGATGTTATTTTGCTTTATGATAGTATACGACATTATTT
TTGTTTTGATAGCCCCAGTCTCTATCGTATTGTGTTGGATTTTTGAATTTATGTTCATTTCGGTTTCAAAGATATCTAAGTTCTTTTTTT
CTTAAAAAAAAAAAAAAAAAAAAAAATTTTTGGTGCCTTACTCCTGTTTTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	4
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	6
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	cTSB	seed	1880	3
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (51)

Alignment image suppressed for unigene with 51 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 2 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101435	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	166
2	118460	NAD-dependent epimerase/dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: nucleotide-sugar metabolism (GO:0009225) - Molecular Function: NAD binding (GO:0051287)	116
5	129264	Ribosomal protein L30 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Ribosomal L30 N-terminal Ribosomal protein L7 eukaryotic form - Molecular Function: structural constituent of ribosome (GO:0003735) - Biological Process: protein biosynthesis (GO:0006412) - Cellular Component: large ribosomal subunit (GO:0015934) - Molecular Function: transcription regulator activity (GO:0030528)	28

Preceding Unigenes (1)

Unigene	Build
SGN-U213499	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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