Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579551 and SGN-U589895 in the current build, Tomato 200607 #2

Unigene SGN-U312562

Unigene Basic Information

Unigene ID:	SGN-U312562
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312562
mRNA sequence:	Length: 1318 bp

>SGN-U312562 Tomato 200607 #1 (56 members)
AACTAATTTTACTAATACATTAAAAAAAAATGAGGCTTTCTGAATTCACTACTCTTTTCTTACTATTTTCTGTGCTTTTGCTGTCTGCCT
CTGCAGAGCAATGTGGTTCACAGGCCGGAGGCGCACTTTGTGCATCCGGACTGTGTTGCAGTAAATTTGGTTGGTGTGGTAACACTAATG
AGTATTGTGGTCCTGGTAATTGTCAGAGCCAGTGTCCTGGCGGTCCCGGTCCTTCAGGGGACCTAGGCGGTGTTATTTCAAATTCCATGT
TTGATCAAATGCTTAATCATCGCAATGACAATGCTTGTCAAGGAAAGAATAATTTCTACAGTTACAATGCATTTGTTACTGCTGCTGGGT
CTTTTCCTGGATTTGGTACTACTGGGGATATCACTGCCCGTAAAAGGGAAATTGCTGCTTTCCTTGCCCAAACTTCCCATGAAACTACTG
GAGGATGGCCTACGGCACCAGATGGACCATACGCATGGGGTTACTGTTTCCTTAGAGAGCAAGGTAGCCCTGGCGATTACTGTACACCAA
GTAGTCAATGGCCTTGTGCTCCTGGAAGGAAATATTTCGGACGAGGTCCAATTCAAATTTCACACAACTACAACTATGGGCCATGTGGAA
GAGCCATTGGAGTGGACCTTTTGAACAATCCCGATCTAGTAGCAACAGACCCAGTCATCTCATTCAAATCAGCTATCTGGTTCTGGATGA
CTCCTCAATCCCCAAAGCCTTCTTGTCACGATGTCATCACCGGAAGATGGCAGCCATCTGGCGCTGACCAAGCAGCTAATCGCGTCCCTG
GATTCGGTGTCATCACAAACATCATCAATGGTGGCCTGGAATGTGGTCACGGCAGTGACAGCAGGGTCCAGGATCGGATTGGATTTTACA
GGAGGTATTGCGGAATTCTTGGAGTTAGCCCAGGTGAAAATCTTGATTGTGGCAATCAGAGGTCTTTTGGAAACGGACTATTAGTTGATA
TTATGTAACGATCGACTTCATCATATAAGGCCCCAACTATAAATAAATTTAATATGTATGAAATTGTATGAATTATGATTGTAATATGAT
GGGACCTTGTCTTATAATCGTTTGTTTTGATAATAAACAAAGACTACGATGGTTCTTATTCTAAAAAAAAAAAAAAAAAAAGCACCCATA
TAAACTTTACTTGATAACTACAAGCACTAGCAATTCCACCACCAAAAAAAGAAACTATTCTATCAACTTGTCCCAATATTTCTATAACAA
TTCTTCAAAAATAACCCCATTAAAAACCTAACACACACACAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Z15140	chitinase Z15140	chitinase

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	13
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOS	suspension cultures	8026	13
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (56)

Alignment image suppressed for unigene with 56 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 4 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101487	Glycoside hydrolase family 19 - Molecular Function: chitinase activity (GO:0004568) - Biological Process: chitin catabolism (GO:0006032) - Biological Process: response to pest pathogen or parasite (GO:0009613) - Biological Process: cell wall catabolism (GO:0016998)	104
2	118520	Glycoside hydrolase family 19 - Molecular Function: chitinase activity (GO:0004568) - Biological Process: chitin catabolism (GO:0006032) - Biological Process: response to pest pathogen or parasite (GO:0009613) - Biological Process: cell wall catabolism (GO:0016998)	68
5	129037	Glycoside hydrolase family 19 - Molecular Function: chitinase activity (GO:0004568) - Biological Process: chitin catabolism (GO:0006032) - Biological Process: response to pest pathogen or parasite (GO:0009613) - Biological Process: cell wall catabolism (GO:0016998)	54

Preceding Unigenes (1)

Unigene	Build
SGN-U212883	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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