Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579762 in the current build, Tomato 200607 #2

Unigene SGN-U312560

Unigene Basic Information

Unigene ID:	SGN-U312560
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312560
mRNA sequence:	Length: 1208 bp

>SGN-U312560 Tomato 200607 #1 (48 members)
AATTGAGTGATTTATGAAGAAAAAAGTTCAAATAACGATGTGAAATATTATTTCTAGCTATAAATACATCTCCTTTTACCACTTGTTCCC
CATCATGACCTTTTCCTACAACAATAAAATGAGGCATTTTGAATTCATAGTTTTTTCTTTACTATTTTCTTCACCTTTGCTGACTGCCTC
CGCAGAGCAATGTGGTGTGCAGGCAGGAGGTGCGCTTTGTGCCGCGGGACTGTGTTGCAGCAAATTTGGGTGGTGTGGTTACACTGATGC
CCATTGTGCTCCCGGCAATTGTCAAAGCCAGTGTCGTGACAGCCCCGAACCTTCTGGGGACCTTAGCGGTGTCATCTCAAATTCCATGTT
TGATCAGATGCTGAATCATCGCAACGATAATACTTGTCAAGGAAAAAATAATTTCTATAGCTACAATGCATTTATTAGTGCTGCCAAGTC
ATTTCCTGGCTTTGGCACCTCTGGTGATACCACTGCTCGTAAAAGGGAAATTGCTGCCTTCTTTGCCCAAACCTCTCATGAAACTACTGG
AGGATGGCCTACGGCACCAGATGGACCCTACGCATGGGGTTACTGCTTCCTTAGAGAACAGGGAAGCCCGGGCGATTACTGTACACCAAG
TAGTCAATGGCCTTGTGCTCCTGGAAGGAAATATTTCGGACGAGGCCCAATTCAAATTTCACACAACTACAACTATGGGCCATGTGGAAG
AGCCATTGGAGTGGACCTTTTAAACAATCCTGACTTAGTAGCAACAGACCCAAGCATCTCATTCAAATCAGCTATATGGTTCTGGATGAC
CCCTCAATCACCAAAGCCTTCTTGTCATGATGTCATCACTGGAAGATGGCAACCATCTAATGTTGACCAAGCAGCTAATCGCCTCCCTGG
ATTCGGTGTCATCACAAACATCATCAACGGTGGCCTGGAATGTGGTCATGGGAATGATAACAGGGTTCAGGATCGAATTGGATTTTATAG
GAGATATTGTGAAATTCTTGGAGTTAGTCCTGGTAACAATCTCGATTGTGGCAGCCAGCGGTCCTTTGGAAACGGACTCTTAGTCGATAC
TATGTAACAACTTCATCCCTTGTTTTGTTGTATTCTCTTGTAACCTATAATGTCTCAGCTATAAATAAATTGTGATAATAGTCTGAATGT
CTGATGGGACCTGACTATAACTGCTTGTAATAATAAAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	41
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOS	suspension cultures	8026	2

mRNA member sequences (48)

Alignment image suppressed for unigene with 48 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101487	Glycoside hydrolase family 19 - Molecular Function: chitinase activity (GO:0004568) - Biological Process: chitin catabolism (GO:0006032) - Biological Process: response to pest pathogen or parasite (GO:0009613) - Biological Process: cell wall catabolism (GO:0016998)	104
2	118520	Glycoside hydrolase family 19 - Molecular Function: chitinase activity (GO:0004568) - Biological Process: chitin catabolism (GO:0006032) - Biological Process: response to pest pathogen or parasite (GO:0009613) - Biological Process: cell wall catabolism (GO:0016998)	68
5	129037	Glycoside hydrolase family 19 - Molecular Function: chitinase activity (GO:0004568) - Biological Process: chitin catabolism (GO:0006032) - Biological Process: response to pest pathogen or parasite (GO:0009613) - Biological Process: cell wall catabolism (GO:0016998)	54

Preceding Unigenes (1)

Unigene	Build
SGN-U212882	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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