Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U580023 and SGN-U593632 in the current build, Tomato 200607 #2

Unigene SGN-U312532

Unigene Basic Information

Unigene ID:	SGN-U312532
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312532
mRNA sequence:	Length: 1559 bp

>SGN-U312532 Tomato 200607 #1 (187 members)
CAAAATAATTTGTCTACTCTCTCCATAGTCCATACAAACCATTTCTTACTGCCACTCATCCACTTTCTAACAAAGCAGAAACAGAGAGGA
ACACAAGACATTTGATCAACAAAAAAAGGGGTAAAATTATGGCTGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCGACAAAGGTTG
GTGTTAGAAACAACCTGCAGTTGAGGTCTGCTCAAAGTGTGAGCAAAGCATTTGGTGTTGAACAAGGTTCAGGCAGGCTTACTTGCTCTT
TGCAAACTGAAATCAAGGAATTGGCTCAGAAATGTACTGATGCTGCCAAGATTGCTGGTTTTGCTCTTGCCACCTCTGCCCTCGTCGTCT
CGGGAGCAAATGCGGAAGGAGTTCCAAAACGTTTAACCTATGATGAAATCCAAAGTAAGACATATATGGAAGTAAAGGGAACTGGAACTG
CTAACCAATGTCCTACCATTGAAGGAGGTGTTGGCAGCTTTGCCTTCAAACCAGGCAAATACACTGCCAAGAAATTCTGCCTAGAGCCCA
CATCATTCACAGTCAAGGCAGAGGGTGTCAGCAAGAACTCAGCCCCAGACTTCCAAAAAACCAAGCTCATGACACGCTTAACCTACACTC
TTGATGAGATTGAGGGACCATTTGAAGTGTCTCCGGATGGCACTGTTAAGTTTGAGGAGAAGGATGGAATTGATTATGCTGCTGTTACAG
TTCAGCTTCCTGGTGGTGAGCGTGTGCCCTTCCTCTTCACTATCAAACAGCTTGTGGCAAGCGGCAAGCCAGAAAGCTTTAGTGGTGAGT
TCCTTGTGCCATCATACAGAGGTTCATCCTTCCTTGACCCAAAGGGACGAGGTGGATCTACTGGCTATGACAACGCTGTTGCATTGCCTG
CTGGAGGGAGAGGAGACGAGGAGGAGCTTCAGAAGGAGAACGTAAAGAACACTGCATCTTTAACAGGAAAGATCACCTTGAGTGTTACCC
AGAGCAAGCCAGAGACTGGTGAGGTCATTGGAGTATTTGAGAGCATCCAGCCATCTGATACTGATCTGGGGGCAAAGGTTCCCAAGGATG
TCAAAATCCAGGGTATCTGGTATGCCCAACTTGAATGATGGAGAGTTCTAGAATGTGTGTATCATTTCTTGGTCTAAATTTTGTTGTAAG
TTACAAGGTTAAACATTCTGTGACCCAATTTGGACAAGCACTGAAACAACTATCTTGCTGTATATTATCAAGCTCAAGTAATATTTCATG
CTGGTAGCCAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGTGCCGAATTCGGCACGAGGCTCCAAGATTAACTGTTGTTGAAAGA
AGATGATATTGTAGCTTTGAAAGTATTATTATCTGTAACTATCACAAATTTACTCTTGGCATATACCCCTGATATGTCAATAAATTAGTT
TGGATGATAAAGTAGACAGATGGACTAATTGAACACCAATATTGATGTAGTTAGTGCAAAAATAAACTTGTCAATGAAATCCATCTTATG
ATTTCTCTTCCAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
psbo	33kDa precursor protein of oxygen-evolving complex

Genomic locations (0)

None

Library representation (25)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	5
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	7
Solanum lycopersicum	LA	Leaf Mature leaves	6589	7
Solanum lycopersicum	LB	Leaf Mature leaves	3316	10
Solanum lycopersicum	LC	Leaf Mature leaves	5712	8
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	16
Solanum lycopersicum	cLER	leaf 4 weeks	5127	13
Solanum lycopersicum	cLES	leaf 4 weeks	5243	8
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	38
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	8
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	6
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	7
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	26
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	6

mRNA member sequences (187)

Alignment image suppressed for unigene with 187 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 2 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101882	Photosystem II manganese-stabilizing protein PsbO - Molecular Function: calcium ion binding (GO:0005509) - Cellular Component: oxygen evolving complex (GO:0009654) - Biological Process: photosynthesis (GO:0015979) - Cellular Component: extrinsic to membrane (GO:0019898) - Biological Process: photosystem II stabilization (GO:0042549)	31
2	118769	Photosystem II manganese-stabilizing protein PsbO - Molecular Function: calcium ion binding (GO:0005509) - Cellular Component: oxygen evolving complex (GO:0009654) - Biological Process: photosynthesis (GO:0015979) - Cellular Component: extrinsic to membrane (GO:0019898) - Biological Process: photosystem II stabilization (GO:0042549)	31
5	129210	Photosystem II manganese-stabilizing protein PsbO - Molecular Function: calcium ion binding (GO:0005509) - Cellular Component: oxygen evolving complex (GO:0009654) - Biological Process: photosynthesis (GO:0015979) - Cellular Component: extrinsic to membrane (GO:0019898) - Biological Process: photosystem II stabilization (GO:0042549)	31

Preceding Unigenes (1)

Unigene	Build
SGN-U212743	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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