Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578941 and SGN-U579957 in the current build, Tomato 200607 #2

Unigene SGN-U312504

Unigene Basic Information

Unigene ID:	SGN-U312504
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312504
mRNA sequence:	Length: 1904 bp

>SGN-U312504 Tomato 200607 #1 (157 members)
TTCATCCACCCCATATAATTTTTGTCTTTTTATTAATTCCTATTTAATTAATTTCTTGCCCCATTTTTGTCATTATTATTATTGTTTTCT
TTTTTCTACTATTTTAGTAGCAATTTGTTCACTGGTTTTCACTAAGCACAAAGTGTTCTCAACACAGCTTGGGAGTCCAAGGGAAGTTTG
GAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGAAGTAACCAATGTTACGGAGTATCAGGAGATCGCCAAGAAAAAGTTGCCAAAGATG
GTTTATGACTACTATGCCTCGGGAGCTGAGGACCAGTGGACTCTGGCTGAGAACAGAAACGCCTTCTCAAGAATTCTGTTTAGGCCCCGT
ATTCTCATTGATGTGAGCAAAATTGACATGACCACCACAGTGCTAGGATTCAAGATTTCAATGCCTATCATGATTGCACCAACAGCCATG
CAGAAAATGGCACATCCTGAAGGGGAGTATGCTACAGCAAGAGCAGCATCAGCAGCAGGCACAATCATGACATTGTCATCCTGGGCCACT
TCCAGCGTTGAGGAGGTTGCTTCAACAGGACCTGGCATCCGTTTCTTCCAGCTTTATGTCTACAAGGACAGAAATGTTGTTGCTCAACTT
GTGAGGAGAGCTGAAAAGGCAGGTTTCAAGGCTATAGCCCTCACAGTTGATACCCCAAGGCTCGGACGTAGAGAAGCTGATATTAAGAAC
AGATTCGTGTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGCAAGATGGACCAAGCTAATGACTCTGGCTTAGCT
TCGTATGTTGCTGGTCAAATTGATCGCACTTTGAGCTGGAAGGATGTTCAGTGGCTCCAGACTATCACTTCAATGCCAATCCTGGTGAAG
GGTGTAATTACGGCTGAGGATGCTAGGCTTGCAGTTCAGGCTGGAGCAGCTGGTATCATTGTGTCAAACCATGGTGCTCGCCAGCTCGAT
TATGTCCCTGCAACAATCTCGGCTCTTGAAGAGGTTGTGAAAGGTGCACAAGGCAGGATCCCCGTATTCTTGGATGGAGGTGTCCGCCGT
GGAACAGATGTCTTTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAA
GCTGGAGTGAAAAAAGTGCTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACT
AGAAACCACATTGTCACTGAATGGGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTT
CATCAAAGCAATATTGCTTCACTGTCTAAGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGTTATGTTAAGC
TTTTCATGGTATTGGAAAACTGATATATTCTGATAAATGGCAAGTGATGCCTCCACTGTAAAAAAAAAATTTCTATATATCATCATATCG
TGGAACTTTGCGCGTAAAAAAAAAAAAAAAAAAAATTCCTCTTCGGGGGGGGGCCGGCAACCTATTTCCCCTCATGGGGGATGAAAATAA
ACCCNACNGTATTGGGCATGATGATGGTTGATAAAAATCAAAGTTCTCTAAGCACATTATCTCATCCGATCGATCGACGATTTAGCCAAT
TGTGCAAGCAGTTGCTAGATGTACTGTATATATATGCTCTTATGTTAGTTATATGTGGAATGTTAGTAATGGCTAATAGAGAAATTTTTT
GACTTTTTTCCTATGTATTTGTATATTTGCTGCTGCCTGCTATGGTTGTGACCTTGGACTAAATTTTTAATGGCTAATAGAGAGTTTTAT
TTCAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
X92888	glycolate oxidase X92888	glycolate oxidase

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	6
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	8
Solanum lycopersicum	LB	Leaf Mature leaves	3316	4
Solanum lycopersicum	LC	Leaf Mature leaves	5712	11
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	9
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	5
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	18
Solanum lycopersicum	cLER	leaf 4 weeks	5127	13
Solanum lycopersicum	cLES	leaf 4 weeks	5243	8
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	40
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	12
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (157)

Alignment image suppressed for unigene with 157 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 2 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101881	FMN/related compound-binding core	31
2	118906	FMN/related compound-binding core FMN-dependent alpha-hydroxy acid dehydrogenase active site - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) FMN-dependent alpha-hydroxy acid dehydrogenase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	26
5	129361	FMN/related compound-binding core FMN-dependent alpha-hydroxy acid dehydrogenase active site - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491) FMN-dependent alpha-hydroxy acid dehydrogenase - Biological Process: electron transport (GO:0006118) - Molecular Function: oxidoreductase activity (GO:0016491)	24

Preceding Unigenes (1)

Unigene	Build
SGN-U213050	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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