Sol Genomics Network

Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578876, SGN-U579767, and SGN-U589880 in the current build, Tomato 200607 #2

Unigene SGN-U312348

Unigene Basic Information

Unigene ID:	SGN-U312348
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312348
mRNA sequence:	Length: 2090 bp

>SGN-U312348 Tomato 200607 #1 (102 members)
GCACGAGAAAGATCAAAAACCGAAACGTATCGACATTTGTGCCAATTGCCAGCCCAAAATTTGAAGTCTGAAAGTAGTAGTTTCTGTTTA
GTTTGTTGAAGTGAAAAGCCATGGCATCTTTGGCAACCCTTGCTGCAGTGCAGCCAACTACCAACATCAAGGGCCTAGCTGGAAGTTCAA
TCACTGGAACTAAGCTTCATCTCAAATCATCTCGTCTCAATTTTAACCGCACTAAATTCAGGGCTTGTTCTGTAGTTGCCAAATATGGTG
ACAAGAGTGTATACTTTGATTTGGAGGATTTGGGCAACACAACTGGCCAGTGGGACTTGTATGGATCAGATGCACCTTCACCATACAACT
CTCTTCAGAGCAAGTTTTTTGAGACATTTGCTGCTCCATTCACCAAGAGAGGTCTGTTGCTCAAATTCTTGATATTGGGAGGTGGCTCTA
CCCTCGCCTACTTCAGTTCCACAGCATCAGGGGATATCCTACCAATCAAGAAAGGTCCACAACTTCCACCTAAGCTCGGGCCACGTGGCA
AGATCTAATTGCTTTTCGACTCAATTCTCAACTTTCAATTTGTAATTGATGTATGTGCCCCCAGTTTGTGTAAGTATAATTGAAGACTTC
CCATTACTACAATTTTATATCTTATGGTGAATTTGTAGCATTTGCTTTCTTACTAAAAAAAAAAATTCTGATAGTCTACACTCTACTCAG
ATAATTGAGATAACTATTAGTATTTGTTTAAAAAAAAAAAAAAAAAAAAACTCGAGGCCATAGAGAAGAGTATTTTTGTTCATTTGATTA
CCTGCCCTTTTTTTTTTTAACAACTTTAATAAACTTTCTTGCTGATTGAGCCTAAAAAAAAAAAAAAAAAAACTCGTTTTTTTTTTTTTT
TTTTTTTTGAAACAGAAGATAAATAGCATAAAATCATGGTGAGAACTCTGAAACAGGAAAATACTTGAGTATCATAAACAAAATTTAGCA
GTCGCAAAGCACTAAATGGGATAACAAAAAACACTAACGGTATCATCATTCTTCACTAAAAAAGACAAGTTTATTCCTCATCTTCGATGA
TCTTGGTACCAAGACCCTTCAAACCCTCAGCTGGGATCTCTGCAACAGTGACAAGAGAGTAGAGCTCTTCCTTTGCGTCCTCATCGTCAT
TCCTCTTGCGAGCAATACGAACTCTGATACGTCTTGGAACACTTCGGATGCCTCTGCTCCAGATCTGCTTGTTGAGCTTCACGTCCACTC
TGACATCCTTCGTTCCCATGGCTTTCTGTGCAAACTTTCGGATCTCCTTGATGGCTGTCGGGGCCTTCTTCTTGAATGTGCATCCATGCA
AACGCTTGTGGAGATTAATGGTGTACTCCCTGGAAACAACCTCCTCTTTTCTTCCTTTAGTTTTCTCCACCATTTTCGCTCCTTTTTTTC
ACTACACTTACCGTTCTAGGGTTTGAAACGAAGGTGACAACACTCAAGACTTGCTCTGGTCTTTCATTGAAGACTCAAGTGCTTACAGCT
ATATTTTTGGCGGTAAGATTATACTGTAGTTTTATCATGGAAGCAGATATCCACACTGTGCTAGATTTTATCACCCTTGTGGCAACAGTG
TGGGTCATTTATATGATGAAGTTCAAGCTGAAGGCATCCTACATGGCAGAACTGGATAACATGCCCTTATACTATCCGATTATTCCCGCC
GCAGTTTTAGCCTTCTTTGTCCATCCTACTACAAGCCATATTCTGATAAACCGAATGCTTTGGGCTTTTTGTGTATATCTAGAATCACGA
CACAGTACTGCCTCAGCTTCACTTGATGCAAAATGTTCAAATAATTGAGCCATTTTCGGCTCATTATGTTTTCGCGCTGGGCGTTGCAAG
ATTCTTGGGGTGTGCTCATTGGATTATTCATGTTTATGACACTGCGGGACCATATATTTACTTGGCTGGACGTGGTTATCTCTGGATACC
TACCGACTTTTTGGCAAAAATGGTTCAAACGCCTCATCTTGGCCGATTTCTGATATTATTATGTAAAAAGAGGCATGAGCGGCCATTTGA
TCGTTCGCCTGCCAACGCCG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	6
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	19
Solanum lycopersicum	cLER	leaf 4 weeks	5127	7
Solanum lycopersicum	cLES	leaf 4 weeks	5243	4
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	21
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	5
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	12
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	6

mRNA member sequences (102)

Alignment image suppressed for unigene with 102 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 3 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101363	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor	1182
2	119026	ER lumen protein retaining receptor - Biological Process: protein retention in ER (GO:0006621) - Cellular Component: integral to membrane (GO:0016021) - Molecular Function: ER retention sequence binding (GO:0046923)	22
5	129474	ER lumen protein retaining receptor - Biological Process: protein retention in ER (GO:0006621) - Cellular Component: integral to membrane (GO:0016021) - Molecular Function: ER retention sequence binding (GO:0046923)	20

Preceding Unigenes (1)

Unigene	Build
SGN-U212569	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: