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Unigene SGN-U296730

Unigene Basic Information

Unigene ID:	SGN-U296730
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	296730
mRNA sequence:	Length: 444 bp

>SGN-U296730 Solanum tuberosum #4 (1 members)
GTGCTTTCTGGAACAACTTCAAGTGGAACCCACCATGCTGGTGTCCTGGAAGGTTGGTTCGGAGTTCATTGGTGGAATGGACGATTCTTT
GTTCTTCTTGTGACCACCCTTGGCGTATTTGCACCATTAGCTTGCTTAAAGCGTATAGATTCATTGAGATATACATCTACATTATCAGTC
GCCCTGGCTATTGTATTTCTGGTCGTAACTGTGGGAATCACCATATTCAAGCTGATGAATGGATCAATTCTTAATCCCAGATTGCTTCCC
AGTTTATATGATCTAACGTCATTCCTCAAGCTATTCACAGCTGTTCCTGTGATGGTCACTGCGTACATCTGTCACTATCATGTTCACTCC
ATAGAAAATGAACTTGAATAAAGCAGGCAGATCAGATCAGTGGTGCAAAGTGCGCTTGCTCTTTGCTCGAGTGTGTATGTGCTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E439308
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|224119332\|ref\|XP_002331285.1\|	233	4e-60	76.35	444 bp (100.0%)	2
Description:	amino acid transporter [Populus trichocarpa] >gi222873710\|gb\|EEF10841.1\| amino acid transporter…
arabidopsis	blastx	At3G30390.2	218	9e-58	69.59	444 bp (100.0%)	2
Description:	amino acid transporter family protein \| chr3:11979591-11981306 REVERSE
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P239018 (126 Aa)

VLSGTTSSGTHHAGVLEGWFGVHWWNGRFFVLLVTTLGVFAPLACLKRIDSLRYTSTLSVALAIVFLVVTVGITIFKLMNGSILNPRLLP
SLYDLTSFLKLFTAVPVMVTAYICHYHVHSIENELE

SignalP predicts non-secretion with a score of 0.359

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P94703 (149 Aa)

VLSGTTSSGTHHAGVLEGWFGVHWWNGRFFVLLVTTLGVFAPLAXLKAYRFIEIYIYISVALAIVFLVVTVGITIFKLMNGSILNPRLLP
SLYDLTSFLKLFTAVPVMVTAYICHYHVHSIENELXIKQADQISGAKCACSLLECVCAX

SignalP predicts non-secretion with a score of 0.353

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	71	AA/rel_permease2	167
2	22710	AA/rel_permease2 ArAA_permease	21
5	57368	AA/rel_permease2 ArAA_permease	14
1.1	101450	Amino acid transporter transmembrane Amino acid/polyamine transporter II - Molecular Function: amino acid-polyamine transporter activity (GO:0005279) - Biological Process: amino acid transport (GO:0006865) - Cellular Component: membrane (GO:0016020)	143
2	119251	Amino acid transporter transmembrane Amino acid/polyamine transporter II - Molecular Function: amino acid-polyamine transporter activity (GO:0005279) - Biological Process: amino acid transport (GO:0006865) - Cellular Component: membrane (GO:0016020)	18
5	129738	Amino acid transporter transmembrane Amino acid/polyamine transporter II - Molecular Function: amino acid-polyamine transporter activity (GO:0005279) - Biological Process: amino acid transport (GO:0006865) - Cellular Component: membrane (GO:0016020)	16

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U266495	Solanum tuberosum #3

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