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Unigene SGN-U294710

Unigene Basic Information

Unigene ID:	SGN-U294710
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	294710
mRNA sequence:	Length: 433 bp

>SGN-U294710 Solanum tuberosum #4 (1 members)
GAGCAAATGAACTTGATGCCTGGAGGCGGCGGAGGTGGAGGAGGAGGATCTGATCAATACCATCATCAGCCAAATTATGAAGATGCTCGC
AATAACTTCCTGCCTGTAAATCTCCTGGAACCAAATCCCCATTACTCTCGTCGCGACGATGGTGACCAAACTCCTCTCCAGCTTGTCTGA
TAATCATGGAGCAGGTTTTCTGAAATTTGGGGTCGAAGCTCTTCCTTCATCTTCAGAAATGTGTACTACAATTTTTAACCTATAGTGTTG
TAAATCATAATCATAATTATTGCCACTGAGATTTAAACTGTTTATTTTCAAGCAATATTAGTCAGTATTCTGTTAATTAAGGAATGAAAA
ATCTTGTTTGTTATATTATGACTACTTCTATATACTTTTACAGGCTTCTATAAATAAAAAAACTATTGAACTA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E623601
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|24967135\|gb\|AAM33101.2\|	93.2	9e-18	85.94	177 bp (40.9%)	2
Description:	TAGL1 transcription factor [Solanum lycopersicum]
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P236951 (75 Aa)

RKSFDPKFQKTCSMIIRQAGEEFGHHRRDESNGDLVPGDLQAGSYCEHLHNLADDGIDQILLLHLRRLQASSSFA

SignalP predicts non-secretion with a score of 0.043

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P92832 (59 Aa)

EQMNLMPGGGGGGGGGSDQYHHQPNYEDARNNFLPVNLLEPNPHYSRRDDGDQTPLQLV

SignalP predicts non-secretion with a score of 0.033

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	41	TF_MADSbox	256
2	52307		1
5	94490		1
1.1	101412	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	242
2	118437	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	170
5	128950	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	149

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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