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Unigene SGN-U293859

Unigene Basic Information

Unigene ID:	SGN-U293859
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	293859
mRNA sequence:	Length: 424 bp

>SGN-U293859 Solanum tuberosum #4 (1 members)
AGGGAATAGTGAAAAAATGAGAGATGAAAATTCCAAAAAGAGCAAGCTCTCCTGGCCAAAGAAACTTGTCAGAAAATGGTTCAATATTAA
GGGAAAAACTGAAGAATTCCAGTCTGATGAAGTTGTTTATGGAGGTGGCGATGAGTGGAGAACGAGCATCTCGGAGAGGGAGCATTGCAC
GATTAAGAAAACTAAAACAGAAAAATCAAATTCTTCTCGGAGTATGGAGCGTCCCCGACGAGGAAGAGCTGATCTTGATCACCCTCAGAT
TATAAATGTACACAACTACAGCGTTTTCGTTGCTACATGGAACGTGGGTGGAAAATCACCATCAAGTAATTTGAATCTAGATGACTGGCT
TCATTCAGCACCACCTGCAGATATCTATGTACTTGGATTTCAAGAAATAGTTCCTCTAAATGCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E446020
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|270239048\|emb\|CBI26284.1\|	197	4e-49	78.83	408 bp (96.2%)	3
Description:	unnamed protein product [Vitis vinifera]
arabidopsis	blastx	At2G32010.1	150	2e-37	62.77	408 bp (96.2%)	3
Description:	endonuclease/exonuclease/phosphatase family protein \| chr2:13632421-13635158 FORWARD
swissprot	blastx	Q9LR47	144	2e-34	60.87	408 bp (96.2%)	3
Description:	Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P236073 (141 Aa)

GNSEKMRDENSKKSKLSWPKKLVRKWFNIKGKTEEFQSDEVVYGGGDEWRTSISEREHCTIKKTKTEKSNSSRSMERPRRGRADLDHPQI
INVHNYSVFVATWNVGGKSPSSNLNLDDWLHSAPPADIYVLGFQEIVPLNA

SignalP predicts non-secretion with a score of 0.024

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P92045 (136 Aa)

MRDENSKKSKLSWPKKLVRKWFNIKGKTEEFQSDEVVYGGGDEWRTSISEREHCTIKKTKTEKSNSSRSMERPRRGRADLDHPQIINVHN
YSVFVATWNVGGKSPSSNLNLDDWLHSAPPADIYVLGFQEIVPLNA

SignalP predicts non-secretion with a score of 0.034

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	309	Exo_endo_phos	51
2	22278	Exo_endo_phos	38
5	56551	Exo_endo_phos	32
1.1	101698	Inositol polyphosphate related phosphatase - Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437) Endonuclease/exonuclease/phosphatase	45
2	118754	Inositol polyphosphate related phosphatase - Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437) Endonuclease/exonuclease/phosphatase	31
5	129274	Inositol polyphosphate related phosphatase - Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437) Endonuclease/exonuclease/phosphatase	27

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U264938	Solanum tuberosum #3

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