Sol Genomics Network

Unigene SGN-U292737

Unigene Basic Information

Unigene ID:	SGN-U292737
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	292737
mRNA sequence:	Length: 469 bp

>SGN-U292737 Solanum tuberosum #4 (1 members)
TTCCCACGCAGGCTGGATACAATCAAGAGGATTCTGTCATTATGAATCAGACATCGATTGATCGAGGATTTTTCCGATCTCTGCTTTTCC
GTTCGTACAGGGACGAGGAGAAAAAGATGGGGACATTGGTCAAGGAGGACTTTGGACGTACTGATAGAGCTACTACTATGGGTATGCGCC
ATGGCTCGTACGATAAGTTGGATGACGATGGTCTTGCCCCTCCAGGAACTAAAGTTTCTGGTGAAGATGTTATCATTGGGAAGACAACTC
CCATTTCTCAGGATGATGCGCAAGGGCAAGCCTCTCGCTATACGAGGAAAGATCACAGTACCAGTCTTCGCCATAGTGAAACTGGAATGG
TGGATCAGGTTCTATTAACAACAAATGCTGACCGGCTCATATTTGTTAAAGTGAGGGTCAGATCACTCCGTATTCCTCAAATTGGGGACA
AGTTTAGCAGTAGACATGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E480131
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	665	RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_B RNA_pol_Rpb2_7	28
2	22770	RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_B RNA_pol_Rpb2_7	20
5	57325	RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 RNA_pol_B RNA_pol_Rpb2_7 RNA_pol_Rpb2_4	14
1.1	101927	RNA polymerase Rpb2 domain 6 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 7 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase beta subunit - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 3 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 2 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	28
2	119070	RNA polymerase Rpb2 domain 3 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 6 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 2 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase beta subunit - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 7 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	21
5	129582	RNA polymerase Rpb2 domain 3 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 6 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 2 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase beta subunit - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 7 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	18

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U262539	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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