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Unigene SGN-U292498

Unigene Basic Information

Unigene ID:	SGN-U292498
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	292498
mRNA sequence:	Length: 264 bp

>SGN-U292498 Solanum tuberosum #4 (1 members)
TTTTTTTTTTTTTTTTGAAATATTAAATGAATTATTTCCTACTACTATTTTAAATTAAATAGTAGGAATTAATTTAACTAAAATCATGTT
AAATTATCACAGGGGTCCACAAGAGAAAATGGAAACACATCACGTGAAGGCGCAAGTTAGCTTAAGGTAATGCATTTTTAAGAAGCTTAC
GCTTCTTCCGTGCAACTCATCGGCGCCGCCGTTGACGGTGGTTCATCGGCGGTATTCATTTTCTTCATGTTCTGCTCATGATAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	MXFL	Floral buds	6603	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E623849
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P234678 (34 Aa)

CIFKKLTLLPCNSSAPPLTVVHRRYSFSSCSAHD

SignalP predicts non-secretion with a score of 0.269

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P90778 (36 Aa)

YHEQNMKKMNTADEPPSTAAPMSCTEEAKLLKNALP

SignalP predicts non-secretion with a score of 0.015

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	32	TF_bZIP	291
2	51491		1
5	93460		1
1.1	101428	Basic-leucine zipper (bZIP) transcription factor - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Molecular Function: protein dimerization activity (GO:0046983)	192
2	118722	Eukaryotic transcription factor DNA-binding Basic-leucine zipper (bZIP) transcription factor - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Molecular Function: protein dimerization activity (GO:0046983)	33
5	139981		2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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