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Unigene SGN-U290898

Unigene Basic Information

Unigene ID:	SGN-U290898
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	290898
mRNA sequence:	Length: 442 bp

>SGN-U290898 Solanum tuberosum #4 (1 members)
GTGAGTTCTGCAAAAGTAGGGTTTCTTACAAACACATCGCGCAGCCTCGCTTTTCTGCCTTGTGAAGATGGGTCACTCTAACATCTGGAA
CGCTCATCCAAAGAACTACGGCCCTGGCTCTCGCACATGCCGTGTGTGTGGTAATCCTCATGCAATTATTAGAAAGTATGGACTCATGTG
CTGCAGACAGTGCTTCCGCAGCAATGCCAAGGAAATTGGCTTCATTAAGTACCGGTAAAATCTCTCCTATGAACATCTACCGGGACCTCT
ACATGGGGGGGTGGGAAATATATGCCATTAAAACTTTTTGAATTGCATCTCCCCTCCGTTAAATGAAGGAATGGGATAATTTTGAATTAT
GGTTAACTTTTGGAAATGAACTGGTATGTGGAACTTAGAAAGAATAACCTTTTTAAAATTAATAATTTGGTCCATATAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E457909
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|224067216\|ref\|XP_002302413.1\|	127	3e-28	96.43	168 bp (38.0%)	3
Description:	predicted protein [Populus trichocarpa] >gi224129898\|ref\|XP_002320698.1\| predicted protein [Pop…
arabidopsis	blastx	At4G33865.1	116	6e-27	85.71	168 bp (38.0%)	3
Description:	40S ribosomal protein S29 (RPS29C) \| chr4:16233400-16234119 REVERSE
swissprot	blastx	Q680P8	116	6e-26	85.71	168 bp (38.0%)	3
Description:	40S ribosomal protein S29 OS=Arabidopsis thaliana GN=RPS29A PE=3 SV=2

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P89274 (78 Aa)

VSSAKEGFLQTHRAASLFCLVKMGHSNIWNAHPKNYGPGSRTCRVCGNPHAIIRKMDSCAADSASXSNAKEIGFIKYR

SignalP predicts non-secretion with a score of 0.263

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P233041 (81 Aa)

RWVTLTSGTLIQRTTALALAHAVCVVILMQLLESMDSCAADSASAAMPRKLASLSTGKISPMNIYRDLYMGGWEIYAIKTF

SignalP predicts secretion with a score of 0.482

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1474	Ribosomal_S14	13
2	27784	Ribosomal_S14	4
5	61918	Ribosomal_S14	4
1.1	102611	Ribosomal protein S14 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	12
2	120028	Ribosomal protein S14 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	11
5	136407		3

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U261522	Solanum tuberosum #3

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