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Unigene SGN-U290553

Unigene Basic Information

Unigene ID:	SGN-U290553
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	290553
mRNA sequence:	Length: 229 bp

>SGN-U290553 Solanum tuberosum #4 (1 members)
TGGATTTGAAGTTTATGGAGAGTGTTTGGTGGGTTTTTGCTAAGCTGTTTGAAAAGGGTCTTGTTTATAGAGGCTTCAAGGTTATGCCTT
ATAGTACTGGTTTGAAGACTCCATTATCCAATTTTGAAGCTAATTCAAATTACAAGGAAGTAAGCGACCCTGAAATCATGGTTTCATTCC
CTATAGTTGATGATCCTGAGGGTGCATCCTTTGTTGCATGGACTACTAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	SWST	Stolon	5942	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E559102
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|270254249\|emb\|CBI36641.1\|	143	6e-33	86.67	225 bp (98.3%)	1
Description:	unnamed protein product [Vitis vinifera]
arabidopsis	blastx	At4G10320.1	129	3e-31	77.33	225 bp (98.3%)	1
Description:	isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative \| chr4:6397522-6404505…
swissprot	blastx	Q54YD4	108	1e-23	69.33	225 bp (98.3%)	1
Description:	Probable isoleucyl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=ileS PE=3 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P232688 (76 Aa)

DLKFMESVWWVFAKLFEKGLVYRGFKVMPYSTGLKTPLSNFEANSNYKEVSDPEIMVSFPIVDDPEGASFVAWTTT

SignalP predicts non-secretion with a score of 0.255

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P100691 (76 Aa)

DLKFMESVWWVFAKLFEKGLVYRGFKVMPYSTGLKTPLSNFEANSNYKEVSDPEIMVSFPIVDDPEGASFVAWTTT

SignalP predicts non-secretion with a score of 0.255

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	385	tRNA-synt_val tRNA-synt_I tRNA-synt_1a Leu-tRNA-synt1a tRNA-synt_ile	44
2	23832	tRNA-synt_val tRNA-synt_I Leu-tRNAsynt1a tRNA-synt_1a Leu-tRNA-synt1a tRNA-synt_ile tRNA-synt_met	10
5	57904	tRNA-synt_val tRNA-synt_I Leu-tRNAsynt1a tRNA-synt_1a Leu-tRNA-synt1a tRNA-synt_ile tRNA-synt_met	10
1.1	101679	tRNA synthetase valyl/leucyl anticodon-binding Aminoacyl-tRNA synthetase class 1a anticodon-binding	47
2	120469	Aminoacyl-tRNA synthetase class Ia - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Isoleucyl-tRNA synthetase class Ia - Molecular Function: isoleucine-tRNA ligase activity (GO:0004822) - Molecular Function: ATP binding (GO:0005524) - Biological Process: isoleucyl-tRNA aminoacylation (GO:0006428) Aminoacyl-tRNA synthetase class 1a anticodon-binding tRNA synthetase valyl/leucyl anticodon-binding	9
5	130756	Aminoacyl-tRNA synthetase class Ia - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Isoleucyl-tRNA synthetase class Ia - Molecular Function: isoleucine-tRNA ligase activity (GO:0004822) - Molecular Function: ATP binding (GO:0005524) - Biological Process: isoleucyl-tRNA aminoacylation (GO:0006428) Aminoacyl-tRNA synthetase class 1a anticodon-binding tRNA synthetase valyl/leucyl anticodon-binding	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U261571	Solanum tuberosum #3

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