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Unigene SGN-U290426

Unigene Basic Information

Unigene ID:	SGN-U290426
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	290426
mRNA sequence:	Length: 350 bp

>SGN-U290426 Solanum tuberosum #4 (1 members)
TTTTTTTTTTTTTTTTTTCGATCTCTGCAGAGCTTTGCATTAACAAAACTATAACACATGTATCACAAATTCTTCATAATAAAAAGTTTA
GTACCTAAAGATACAAAGTTTTGTGCTACTGTACTTCGAAAATACGCTACGAAATTTACTCATTTTTTACCAACAAGTATTGATTATCTA
GCAGTAGCAGCACCTTCTTTAAACAGGATATTTGGCCGAAGCCAGGCTGGCTTGCCACCAACCTCACCATCCTTAGTACGATGATCCTTC
GAGTCCTTCTTCAGCTTCGCATTAATGCATTTTCCTACAGATACACCAAGCTTTGCTGCTGTAAGTAGGCTAAACACAAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E427666
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P232557 (69 Aa)

HMYHKFFIIKSLVPKDTKFCATVLRKYATKFTHFLPTSIDYLAVAAPSLNRIFGRSQAGLPPTSPSLVR

SignalP predicts non-secretion with a score of 0.114

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P100566 (58 Aa)

IVFSLLTAAKLGVSVGKCINAKLKKDSKDHRTKDGEVGGKPAWLRPNILFKEGAATAR

SignalP predicts secretion with a score of 0.448

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1306	GBP_repeat Prot_kinase	14
2	23801	GBP_repeat Prot_kinase	10
5	59947		5
1.1	102981	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	9
2	123693	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4
5	132809	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U264056	Solanum tuberosum #3

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