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Unigene SGN-U289963

Unigene Basic Information

Unigene ID:	SGN-U289963
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	289963
mRNA sequence:	Length: 296 bp

>SGN-U289963 Solanum tuberosum #4 (1 members)
GGAAGATATACAACTCCCTCTATATCGGCGCCCAGGATGCCCTGGTAGCTTCTTATCCTATTCTGGAAGATGATGAAAACAATGTCTACA
GTAGGCCTGAGCTGAACATGTTCATTTAGATATTTTGCCTCTTATATCTGCTTTGCCATTTTTCCTATTCCATTACGATGAAGTAGCGTA
GCGGTCTCTTGTTTTCGACTAGACTTGTGATGTATCTTATATTCTGAATCGCACGATAGACATGTTTCCCCTTTTTAAATATATTTGCTT
AGCTTTCTTCTGAACAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	TUBS	Tubers	5976	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E606597
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	At5G64270.1	67.8	1e-12	83.33	108 bp (36.5%)	1
Description:	splicing factor, putative \| chr5:25724135-25727944 FORWARD
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P232081 (44 Aa)

EAKYLNEHVQLRPTVDIVFIIFQNRIRSYQGILGADIEGVVYLP

SignalP predicts non-secretion with a score of 0.112

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P100131 (59 Aa)

KIYNSLYIGAQDALVASYPILEDDENNVYSRPXAEHVHLDILPLISALPFFLFHYDEVA

SignalP predicts non-secretion with a score of 0.061

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2300	HEAT Apolipoprotein DUF646 Armadillo	8
2	25578	HEAT Apolipoprotein DUF646 Armadillo	6
5	59576	HEAT Apolipoprotein DUF646 Armadillo	6
1.1	101812	Armadillo-like helical - Molecular Function: binding (GO:0005488) HEAT	35
2	122770	Armadillo-like helical - Molecular Function: binding (GO:0005488) HEAT	5
5	132954	Armadillo-like helical - Molecular Function: binding (GO:0005488) HEAT	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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