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Unigene SGN-U289414

Unigene Basic Information

Unigene ID:	SGN-U289414
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	289414
mRNA sequence:	Length: 440 bp

>SGN-U289414 Solanum tuberosum #4 (1 members)
AGTGAATGAGGAACAAATCATCAAATTGTTCGGAAGTTCTCAACGTTCAAATGAGAGCTCACATATATATTCAGAAGCTTGTATAAAAAT
GTGCCAAGAGTTGGGGATCAAGGTGATTGATCTTTGGACTGCACTTCAAAATCGAGATGATTGGTTGACTGCTCATTTCACGTACGTTTT
TCTATCTTAATTTAAAACTTCAAGTATTAATTAGTGGTAAATAATTGATTGAAAAAACTAAATTCATGCAGATAACTTTATCAATTACGT
TTAAGACTTCTCATCTACTTTCTAATTAAATTATTTTTACGGAGTGTACGTGAGAAAAATTAGATCCTAACTCATGTGCAACATTTCCTT
ACCGAGAATCACTTAATTTGACACCCTTACATATGTAACCCCTTTTTAAGTGATTTCTTCGAAATATATTCTATTTCAAG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E477350
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|255574369\|ref\|XP_002528098.1\|	79.3	1e-13	62.07	171 bp (38.9%)	3
Description:	Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis] >gi223532487\|gb\|EEF34277.1\| I…
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P231522 (62 Aa)

VNEEQIIKLFGSSQRSNESSHIYSEACIKMCQELGIKVIDLWTALQNRDDWLTAHFTYVFLS

SignalP predicts non-secretion with a score of 0.018

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P99644 (33 Aa)

MCQELGIKVIDLWTALQNRDDWLTAHFTYVFLS

SignalP predicts non-secretion with a score of 0.177

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	604	Lipase_GDSL	30
2	22432	Lipase_GDSL	29
5	57062	Lipase_GDSL	17
1.1	101984	Lipolytic enzyme G-D-S-L - Biological Process: lipid metabolism (GO:0006629) - Molecular Function: hydrolase activity acting on ester bonds (GO:0016788)	26
2	118971	Lipolytic enzyme G-D-S-L - Biological Process: lipid metabolism (GO:0006629) - Molecular Function: hydrolase activity acting on ester bonds (GO:0016788)	24
5	129916	Lipolytic enzyme G-D-S-L - Biological Process: lipid metabolism (GO:0006629) - Molecular Function: hydrolase activity acting on ester bonds (GO:0016788)	14

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U260893	Solanum tuberosum #3

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