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Unigene SGN-U288821

Unigene Basic Information

Unigene ID:	SGN-U288821
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	288821
mRNA sequence:	Length: 354 bp

>SGN-U288821 Solanum tuberosum #4 (1 members)
GTCATTTTCTTGATCCATCTCTCTGCTGACTTCCTCATTTAAAAGTTAATTCATTTTGAATACTTGGTACTTTTTCTGAAGCAGATTCTT
CTTAATTTGTCAAAAAGAGAAATGGGAATTTCATCAGAGATGAGAAGGGAGGACTCATGGGCAAAGCGAAGGGAGTCTTTGTTGATTGCT
TCTGCATATGAAGAGGACAGAATTCGCAAGTCTAGGGAATGTACTCAAGAAGGTGGCCGTGCAGGAACTAAAGCAGCCGCAGTTGCTTGG
GGTGCTAATGGTATTCCTACCGTGGGTGGTGTGCGGACCATTCCTTGGGGAAAGGGAAATCTCCATTATACTGGTCCAGCACTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E466964
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P99077 (81 Aa)

MGISSEMRREDSWAKRRESLLIASAYEEDRIRKSRECTQEGGRAGTKAAAVAWGANGIPTVGGVRTIPWGKGNLHYTGPAL

SignalP predicts non-secretion with a score of 0.052

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P230913 (104 Aa)

KLIHFEYLVLFLKQILLNLSKREMGISSEMRREDSWAKRRESLLIASAYEEDRIRKSRECTQEGGRAGTKAAAVAWGANGIPTVGGVRTI
PWGKGNLHYTGPAL

SignalP predicts non-secretion with a score of 0.37

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1950	Enod93	9
2	24338	Enod93	8
5	59943	Enod93	5
1.1	103368	Early nodulin 93 ENOD93 protein - Biological Process: nodulation (GO:0009877)	7
2	121293	Early nodulin 93 ENOD93 protein - Biological Process: nodulation (GO:0009877)	7
5	134004	Early nodulin 93 ENOD93 protein - Biological Process: nodulation (GO:0009877)	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U260526	Solanum tuberosum #3

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